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RUNDC3A (RUN domain containing 3A)

Identity

Alias_symbol (synonym)RPIP8
RAP2IP
Other aliasRPIP-8
HGNC (Hugo) RUNDC3A
LocusID (NCBI) 10900
Atlas_Id 72937
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44308559 and ends at 44318670 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C5orf45 (5q35.3) / RUNDC3A (17q21.31)NBR1 (17q21.31) / RUNDC3A (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RUNDC3A   16984
Cards
Entrez_Gene (NCBI)RUNDC3A  10900  RUN domain containing 3A
AliasesRAP2IP; RPIP-8; RPIP8
GeneCards (Weizmann)RUNDC3A
Ensembl hg19 (Hinxton)ENSG00000108309 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108309 [Gene_View]  chr17:44308559-44318670 [Contig_View]  RUNDC3A [Vega]
ICGC DataPortalENSG00000108309
TCGA cBioPortalRUNDC3A
AceView (NCBI)RUNDC3A
Genatlas (Paris)RUNDC3A
WikiGenes10900
SOURCE (Princeton)RUNDC3A
Genetics Home Reference (NIH)RUNDC3A
Genomic and cartography
GoldenPath hg38 (UCSC)RUNDC3A  -     chr17:44308559-44318670 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RUNDC3A  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblRUNDC3A - 17q21.31 [CytoView hg19]  RUNDC3A - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIRUNDC3A [Mapview hg19]  RUNDC3A [Mapview hg38]
OMIM605448   
Gene and transcription
Genbank (Entrez)AB209802 AF055026 AK123330 AK226045 AK313669
RefSeq transcript (Entrez)NM_001144825 NM_001144826 NM_006695
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RUNDC3A
Cluster EST : UnigeneHs.500197 [ NCBI ]
CGAP (NCI)Hs.500197
Alternative Splicing GalleryENSG00000108309
Gene ExpressionRUNDC3A [ NCBI-GEO ]   RUNDC3A [ EBI - ARRAY_EXPRESS ]   RUNDC3A [ SEEK ]   RUNDC3A [ MEM ]
Gene Expression Viewer (FireBrowse)RUNDC3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10900
GTEX Portal (Tissue expression)RUNDC3A
Human Protein AtlasENSG00000108309-RUNDC3A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ59EK9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ59EK9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ59EK9
Splice isoforms : SwissVarQ59EK9
PhosPhoSitePlusQ59EK9
Domaine pattern : Prosite (Expaxy)RUN (PS50826)   
Domains : Interpro (EBI)Run_dom   
Domain families : Pfam (Sanger)RUN (PF02759)   
Domain families : Pfam (NCBI)pfam02759   
Domain families : Smart (EMBL)RUN (SM00593)  
Conserved Domain (NCBI)RUNDC3A
DMDM Disease mutations10900
Blocks (Seattle)RUNDC3A
SuperfamilyQ59EK9
Human Protein Atlas [tissue]ENSG00000108309-RUNDC3A [tissue]
Peptide AtlasQ59EK9
HPRD16106
IPIIPI00887977   IPI00792752   IPI00298817   IPI00888858   
Protein Interaction databases
DIP (DOE-UCLA)Q59EK9
IntAct (EBI)Q59EK9
FunCoupENSG00000108309
BioGRIDRUNDC3A
STRING (EMBL)RUNDC3A
ZODIACRUNDC3A
Ontologies - Pathways
QuickGOQ59EK9
Ontology : AmiGOprotein binding  cytosol  plasma membrane  small GTPase mediated signal transduction  guanylate cyclase activator activity  GTPase regulator activity  positive regulation of guanylate cyclase activity  peptide hormone receptor binding  
Ontology : EGO-EBIprotein binding  cytosol  plasma membrane  small GTPase mediated signal transduction  guanylate cyclase activator activity  GTPase regulator activity  positive regulation of guanylate cyclase activity  peptide hormone receptor binding  
NDEx NetworkRUNDC3A
Atlas of Cancer Signalling NetworkRUNDC3A
Wikipedia pathwaysRUNDC3A
Orthology - Evolution
OrthoDB10900
GeneTree (enSembl)ENSG00000108309
Phylogenetic Trees/Animal Genes : TreeFamRUNDC3A
HOVERGENQ59EK9
HOGENOMQ59EK9
Homologs : HomoloGeneRUNDC3A
Homology/Alignments : Family Browser (UCSC)RUNDC3A
Gene fusions - Rearrangements
Fusion: Tumor Portal RUNDC3A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRUNDC3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RUNDC3A
dbVarRUNDC3A
ClinVarRUNDC3A
1000_GenomesRUNDC3A 
Exome Variant ServerRUNDC3A
ExAC (Exome Aggregation Consortium)ENSG00000108309
GNOMAD BrowserENSG00000108309
Genetic variants : HAPMAP10900
Genomic Variants (DGV)RUNDC3A [DGVbeta]
DECIPHERRUNDC3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRUNDC3A 
Mutations
ICGC Data PortalRUNDC3A 
TCGA Data PortalRUNDC3A 
Broad Tumor PortalRUNDC3A
OASIS PortalRUNDC3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRUNDC3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRUNDC3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RUNDC3A
DgiDB (Drug Gene Interaction Database)RUNDC3A
DoCM (Curated mutations)RUNDC3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RUNDC3A (select a term)
intoGenRUNDC3A
Cancer3DRUNDC3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605448   
Orphanet
MedgenRUNDC3A
Genetic Testing Registry RUNDC3A
NextProtQ59EK9 [Medical]
TSGene10900
GENETestsRUNDC3A
Target ValidationRUNDC3A
Huge Navigator RUNDC3A [HugePedia]
snp3D : Map Gene to Disease10900
BioCentury BCIQRUNDC3A
ClinGenRUNDC3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10900
Chemical/Pharm GKB GenePA162402277
Clinical trialRUNDC3A
Miscellaneous
canSAR (ICR)RUNDC3A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRUNDC3A
EVEXRUNDC3A
GoPubMedRUNDC3A
iHOPRUNDC3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:26:09 CET 2017

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