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RUNDC3B (RUN domain containing 3B)

Identity

Alias_symbol (synonym)RPIP9
RPIB9
Other alias
HGNC (Hugo) RUNDC3B
LocusID (NCBI) 154661
Atlas_Id 54596
Location 7q21.12  [Link to chromosome band 7q21]
Location_base_pair Starts at 87257729 and ends at 87461613 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KMT2A (11q23.3) / RUNDC3B (7q21.12)PHTF2 (7q11.23) / RUNDC3B (7q21.12)ZNF3 (7q22.1) / RUNDC3B (7q21.12)
PHTF2 7q11.23 / RUNDC3B 7q21.12ZNF3 7q22.1 / RUNDC3B 7q21.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  i(7)(q10)


External links

Nomenclature
HGNC (Hugo)RUNDC3B   30286
Cards
Entrez_Gene (NCBI)RUNDC3B  154661  RUN domain containing 3B
AliasesRPIB9; RPIP9
GeneCards (Weizmann)RUNDC3B
Ensembl hg19 (Hinxton)ENSG00000105784 [Gene_View]  chr7:87257729-87461613 [Contig_View]  RUNDC3B [Vega]
Ensembl hg38 (Hinxton)ENSG00000105784 [Gene_View]  chr7:87257729-87461613 [Contig_View]  RUNDC3B [Vega]
ICGC DataPortalENSG00000105784
TCGA cBioPortalRUNDC3B
AceView (NCBI)RUNDC3B
Genatlas (Paris)RUNDC3B
WikiGenes154661
SOURCE (Princeton)RUNDC3B
Genetics Home Reference (NIH)RUNDC3B
Genomic and cartography
GoldenPath hg19 (UCSC)RUNDC3B  -     chr7:87257729-87461613 +  7q21.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RUNDC3B  -     7q21.12   [Description]    (hg38-Dec_2013)
EnsemblRUNDC3B - 7q21.12 [CytoView hg19]  RUNDC3B - 7q21.12 [CytoView hg38]
Mapping of homologs : NCBIRUNDC3B [Mapview hg19]  RUNDC3B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055233 AK091536 AK293607 AK294039 AY033596
RefSeq transcript (Entrez)NM_001134405 NM_001134406 NM_138290
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)RUNDC3B
Cluster EST : UnigeneHs.411488 [ NCBI ]
CGAP (NCI)Hs.411488
Alternative Splicing GalleryENSG00000105784
Gene ExpressionRUNDC3B [ NCBI-GEO ]   RUNDC3B [ EBI - ARRAY_EXPRESS ]   RUNDC3B [ SEEK ]   RUNDC3B [ MEM ]
Gene Expression Viewer (FireBrowse)RUNDC3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154661
GTEX Portal (Tissue expression)RUNDC3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NL0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NL0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NL0
Splice isoforms : SwissVarQ96NL0
PhosPhoSitePlusQ96NL0
Domaine pattern : Prosite (Expaxy)RUN (PS50826)   
Domains : Interpro (EBI)Run_dom   
Domain families : Pfam (Sanger)RUN (PF02759)   
Domain families : Pfam (NCBI)pfam02759   
Domain families : Smart (EMBL)RUN (SM00593)  
Conserved Domain (NCBI)RUNDC3B
DMDM Disease mutations154661
Blocks (Seattle)RUNDC3B
SuperfamilyQ96NL0
Human Protein AtlasENSG00000105784
Peptide AtlasQ96NL0
HPRD15274
IPIIPI00043731   IPI00892754   IPI00892614   IPI00748938   IPI00909000   
Protein Interaction databases
DIP (DOE-UCLA)Q96NL0
IntAct (EBI)Q96NL0
FunCoupENSG00000105784
BioGRIDRUNDC3B
STRING (EMBL)RUNDC3B
ZODIACRUNDC3B
Ontologies - Pathways
QuickGOQ96NL0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRUNDC3B
Atlas of Cancer Signalling NetworkRUNDC3B
Wikipedia pathwaysRUNDC3B
Orthology - Evolution
OrthoDB154661
GeneTree (enSembl)ENSG00000105784
Phylogenetic Trees/Animal Genes : TreeFamRUNDC3B
HOVERGENQ96NL0
HOGENOMQ96NL0
Homologs : HomoloGeneRUNDC3B
Homology/Alignments : Family Browser (UCSC)RUNDC3B
Gene fusions - Rearrangements
Fusion : MitelmanPHTF2/RUNDC3B [7q11.23/7q21.12]  [t(7;7)(q11;q21)]  
Fusion : MitelmanZNF3/RUNDC3B [7q22.1/7q21.12]  [t(7;7)(q21;q22)]  
Fusion: TCGAPHTF2 7q11.23 RUNDC3B 7q21.12 BRCA
Fusion: TCGAZNF3 7q22.1 RUNDC3B 7q21.12 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRUNDC3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RUNDC3B
dbVarRUNDC3B
ClinVarRUNDC3B
1000_GenomesRUNDC3B 
Exome Variant ServerRUNDC3B
ExAC (Exome Aggregation Consortium)RUNDC3B (select the gene name)
Genetic variants : HAPMAP154661
Genomic Variants (DGV)RUNDC3B [DGVbeta]
DECIPHER (Syndromes)7:87257729-87461613  ENSG00000105784
CONAN: Copy Number AnalysisRUNDC3B 
Mutations
ICGC Data PortalRUNDC3B 
TCGA Data PortalRUNDC3B 
Broad Tumor PortalRUNDC3B
OASIS PortalRUNDC3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRUNDC3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRUNDC3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RUNDC3B
DgiDB (Drug Gene Interaction Database)RUNDC3B
DoCM (Curated mutations)RUNDC3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RUNDC3B (select a term)
intoGenRUNDC3B
Cancer3DRUNDC3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRUNDC3B
Genetic Testing Registry RUNDC3B
NextProtQ96NL0 [Medical]
TSGene154661
GENETestsRUNDC3B
Huge Navigator RUNDC3B [HugePedia]
snp3D : Map Gene to Disease154661
BioCentury BCIQRUNDC3B
ClinGenRUNDC3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154661
Chemical/Pharm GKB GenePA162402278
Clinical trialRUNDC3B
Miscellaneous
canSAR (ICR)RUNDC3B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRUNDC3B
EVEXRUNDC3B
GoPubMedRUNDC3B
iHOPRUNDC3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:57 CET 2017

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