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RUNX1-IT1 (RUNX1 intronic transcript 1)

Identity

Alias_namesC21orf96
chromosome 21 open reading frame 96
RUNX1 intronic transcript 1 (non-protein coding)
Alias_symbol (synonym)FLJ20856
Other alias
HGNC (Hugo) RUNX1-IT1
LocusID (NCBI) 80215
Atlas_Id 72939
Location 21q22.12  [Link to chromosome band 21q22]
Location_base_pair Starts at 36410233 and ends at 36411723 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RUNX1-IT1   16623
Cards
Entrez_Gene (NCBI)RUNX1-IT1  80215  RUNX1 intronic transcript 1
AliasesC21orf96
GeneCards (Weizmann)RUNX1-IT1
Ensembl hg19 (Hinxton) [Gene_View]  chr21:36410233-36411723 [Contig_View]  RUNX1-IT1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:36410233-36411723 [Contig_View]  RUNX1-IT1 [Vega]
TCGA cBioPortalRUNX1-IT1
AceView (NCBI)RUNX1-IT1
Genatlas (Paris)RUNX1-IT1
WikiGenes80215
SOURCE (Princeton)RUNX1-IT1
Genetics Home Reference (NIH)RUNX1-IT1
Genomic and cartography
GoldenPath hg19 (UCSC)RUNX1-IT1  -     chr21:36410233-36411723 -  21q22.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RUNX1-IT1  -     21q22.12   [Description]    (hg38-Dec_2013)
EnsemblRUNX1-IT1 - 21q22.12 [CytoView hg19]  RUNX1-IT1 - 21q22.12 [CytoView hg38]
Mapping of homologs : NCBIRUNX1-IT1 [Mapview hg19]  RUNX1-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024509 AW001989 BC117305
RefSeq transcript (Entrez)NM_025143
RefSeq genomic (Entrez)NC_000021 NC_018932 NG_011402 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)RUNX1-IT1
Cluster EST : UnigeneHs.672131 [ NCBI ]
CGAP (NCI)Hs.672131
Gene ExpressionRUNX1-IT1 [ NCBI-GEO ]   RUNX1-IT1 [ EBI - ARRAY_EXPRESS ]   RUNX1-IT1 [ SEEK ]   RUNX1-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)RUNX1-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80215
GTEX Portal (Tissue expression)RUNX1-IT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7H1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7H1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7H1
Splice isoforms : SwissVarQ9H7H1
PhosPhoSitePlusQ9H7H1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RUNX1-IT1
DMDM Disease mutations80215
Blocks (Seattle)RUNX1-IT1
SuperfamilyQ9H7H1
Peptide AtlasQ9H7H1
IPIIPI00018608   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7H1
IntAct (EBI)Q9H7H1
BioGRIDRUNX1-IT1
STRING (EMBL)RUNX1-IT1
ZODIACRUNX1-IT1
Ontologies - Pathways
QuickGOQ9H7H1
Ontology : AmiGOcytosol  
Ontology : EGO-EBIcytosol  
NDEx NetworkRUNX1-IT1
Atlas of Cancer Signalling NetworkRUNX1-IT1
Wikipedia pathwaysRUNX1-IT1
Orthology - Evolution
OrthoDB80215
Phylogenetic Trees/Animal Genes : TreeFamRUNX1-IT1
HOVERGENQ9H7H1
HOGENOMQ9H7H1
Homologs : HomoloGeneRUNX1-IT1
Homology/Alignments : Family Browser (UCSC)RUNX1-IT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRUNX1-IT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RUNX1-IT1
dbVarRUNX1-IT1
ClinVarRUNX1-IT1
1000_GenomesRUNX1-IT1 
Exome Variant ServerRUNX1-IT1
ExAC (Exome Aggregation Consortium)RUNX1-IT1 (select the gene name)
Genetic variants : HAPMAP80215
Genomic Variants (DGV)RUNX1-IT1 [DGVbeta]
DECIPHER (Syndromes)21:36410233-36411723  
CONAN: Copy Number AnalysisRUNX1-IT1 
Mutations
ICGC Data PortalRUNX1-IT1 
TCGA Data PortalRUNX1-IT1 
Broad Tumor PortalRUNX1-IT1
OASIS PortalRUNX1-IT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRUNX1-IT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RUNX1-IT1
DgiDB (Drug Gene Interaction Database)RUNX1-IT1
DoCM (Curated mutations)RUNX1-IT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RUNX1-IT1 (select a term)
intoGenRUNX1-IT1
Cancer3DRUNX1-IT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRUNX1-IT1
Genetic Testing Registry RUNX1-IT1
NextProtQ9H7H1 [Medical]
TSGene80215
GENETestsRUNX1-IT1
Huge Navigator RUNX1-IT1 [HugePedia]
snp3D : Map Gene to Disease80215
BioCentury BCIQRUNX1-IT1
ClinGenRUNX1-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80215
Chemical/Pharm GKB GenePA134924632
Clinical trialRUNX1-IT1
Miscellaneous
canSAR (ICR)RUNX1-IT1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRUNX1-IT1
EVEXRUNX1-IT1
GoPubMedRUNX1-IT1
iHOPRUNX1-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:10 CET 2017

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