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RWDD1 (RWD domain containing 1)

Identity

Alias_symbol (synonym)PTD013
Other aliasCGI-24
HGNC (Hugo) RWDD1
LocusID (NCBI) 51389
Atlas_Id 72943
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116571367 and ends at 116593601 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RWDD1 (6q22.1) / ADK (10q22.2)RWDD1 (6q22.1) / WASF1 (6q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q21;q22) RWDD1/WASF1


External links

Nomenclature
HGNC (Hugo)RWDD1   20993
Cards
Entrez_Gene (NCBI)RWDD1  51389  RWD domain containing 1
AliasesCGI-24; PTD013
GeneCards (Weizmann)RWDD1
Ensembl hg19 (Hinxton)ENSG00000111832 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111832 [Gene_View]  ENSG00000111832 [Sequence]  chr6:116571367-116593601 [Contig_View]  RWDD1 [Vega]
ICGC DataPortalENSG00000111832
TCGA cBioPortalRWDD1
AceView (NCBI)RWDD1
Genatlas (Paris)RWDD1
WikiGenes51389
SOURCE (Princeton)RWDD1
Genetics Home Reference (NIH)RWDD1
Genomic and cartography
GoldenPath hg38 (UCSC)RWDD1  -     chr6:116571367-116593601 +  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RWDD1  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblRWDD1 - 6q22.1 [CytoView hg19]  RWDD1 - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBIRWDD1 [Mapview hg19]  RWDD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF092134 AF132958 AI129713 AK290727 AK301089
RefSeq transcript (Entrez)NM_001007464 NM_015952 NM_016104
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RWDD1
Cluster EST : UnigeneHs.532164 [ NCBI ]
CGAP (NCI)Hs.532164
Alternative Splicing GalleryENSG00000111832
Gene ExpressionRWDD1 [ NCBI-GEO ]   RWDD1 [ EBI - ARRAY_EXPRESS ]   RWDD1 [ SEEK ]   RWDD1 [ MEM ]
Gene Expression Viewer (FireBrowse)RWDD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51389
GTEX Portal (Tissue expression)RWDD1
Human Protein AtlasENSG00000111832-RWDD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H446   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H446  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H446
Splice isoforms : SwissVarQ9H446
PhosPhoSitePlusQ9H446
Domaine pattern : Prosite (Expaxy)RWD (PS50908)   
Domains : Interpro (EBI)RWD-domain    UBQ-conjugating_enzyme/RWD    ZC3H15/TMA46_C   
Domain families : Pfam (Sanger)DFRP_C (PF16543)    RWD (PF05773)   
Domain families : Pfam (NCBI)pfam16543    pfam05773   
Domain families : Smart (EMBL)RWD (SM00591)  
Conserved Domain (NCBI)RWDD1
DMDM Disease mutations51389
Blocks (Seattle)RWDD1
PDB (SRS)2EBM   
PDB (PDBSum)2EBM   
PDB (IMB)2EBM   
PDB (RSDB)2EBM   
Structural Biology KnowledgeBase2EBM   
SCOP (Structural Classification of Proteins)2EBM   
CATH (Classification of proteins structures)2EBM   
SuperfamilyQ9H446
Human Protein Atlas [tissue]ENSG00000111832-RWDD1 [tissue]
Peptide AtlasQ9H446
HPRD15286
IPIIPI00034010   IPI00983895   IPI00479265   IPI00984474   IPI00979740   
Protein Interaction databases
DIP (DOE-UCLA)Q9H446
IntAct (EBI)Q9H446
FunCoupENSG00000111832
BioGRIDRWDD1
STRING (EMBL)RWDD1
ZODIACRWDD1
Ontologies - Pathways
QuickGOQ9H446
Ontology : AmiGOcytoplasmic translation  protein binding  cytoplasm  polysome  cell aging  androgen receptor signaling pathway  cellular response to oxidative stress  cellular response to testosterone stimulus  positive regulation of androgen receptor activity  
Ontology : EGO-EBIcytoplasmic translation  protein binding  cytoplasm  polysome  cell aging  androgen receptor signaling pathway  cellular response to oxidative stress  cellular response to testosterone stimulus  positive regulation of androgen receptor activity  
NDEx NetworkRWDD1
Atlas of Cancer Signalling NetworkRWDD1
Wikipedia pathwaysRWDD1
Orthology - Evolution
OrthoDB51389
GeneTree (enSembl)ENSG00000111832
Phylogenetic Trees/Animal Genes : TreeFamRWDD1
HOVERGENQ9H446
HOGENOMQ9H446
Homologs : HomoloGeneRWDD1
Homology/Alignments : Family Browser (UCSC)RWDD1
Gene fusions - Rearrangements
Fusion : QuiverRWDD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRWDD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RWDD1
dbVarRWDD1
ClinVarRWDD1
1000_GenomesRWDD1 
Exome Variant ServerRWDD1
ExAC (Exome Aggregation Consortium)ENSG00000111832
GNOMAD BrowserENSG00000111832
Varsome BrowserRWDD1
Genetic variants : HAPMAP51389
Genomic Variants (DGV)RWDD1 [DGVbeta]
DECIPHERRWDD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRWDD1 
Mutations
ICGC Data PortalRWDD1 
TCGA Data PortalRWDD1 
Broad Tumor PortalRWDD1
OASIS PortalRWDD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRWDD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRWDD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RWDD1
DgiDB (Drug Gene Interaction Database)RWDD1
DoCM (Curated mutations)RWDD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RWDD1 (select a term)
intoGenRWDD1
Cancer3DRWDD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRWDD1
MedgenRWDD1
Genetic Testing Registry RWDD1
NextProtQ9H446 [Medical]
TSGene51389
GENETestsRWDD1
Target ValidationRWDD1
Huge Navigator RWDD1 [HugePedia]
snp3D : Map Gene to Disease51389
BioCentury BCIQRWDD1
ClinGenRWDD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51389
Chemical/Pharm GKB GenePA134967923
Clinical trialRWDD1
Miscellaneous
canSAR (ICR)RWDD1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRWDD1
EVEXRWDD1
GoPubMedRWDD1
iHOPRWDD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:27:56 CEST 2018

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