Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RWDD2B (RWD domain containing 2B)

Identity

Alias_namesC21orf6
chromosome 21 open reading frame 6
Alias_symbol (synonym)GL011
Other alias
HGNC (Hugo) RWDD2B
LocusID (NCBI) 10069
Atlas_Id 72945
Location 21q21.3  [Link to chromosome band 21q21]
Location_base_pair Starts at 29005759 and ends at 29019371 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LTN1 (21q21.3) / RWDD2B (21q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RWDD2B   1302
Cards
Entrez_Gene (NCBI)RWDD2B  10069  RWD domain containing 2B
AliasesC21orf6; GL011
GeneCards (Weizmann)RWDD2B
Ensembl hg19 (Hinxton)ENSG00000156253 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156253 [Gene_View]  chr21:29005759-29019371 [Contig_View]  RWDD2B [Vega]
ICGC DataPortalENSG00000156253
TCGA cBioPortalRWDD2B
AceView (NCBI)RWDD2B
Genatlas (Paris)RWDD2B
WikiGenes10069
SOURCE (Princeton)RWDD2B
Genetics Home Reference (NIH)RWDD2B
Genomic and cartography
GoldenPath hg38 (UCSC)RWDD2B  -     chr21:29005759-29019371 -  21q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RWDD2B  -     21q21.3   [Description]    (hg19-Feb_2009)
EnsemblRWDD2B - 21q21.3 [CytoView hg19]  RWDD2B - 21q21.3 [CytoView hg38]
Mapping of homologs : NCBIRWDD2B [Mapview hg19]  RWDD2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA406228 AF212232 AK000056 AK223357 AL355726
RefSeq transcript (Entrez)NM_001320724 NM_016940
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RWDD2B
Cluster EST : UnigeneHs.713123 [ NCBI ]
CGAP (NCI)Hs.713123
Alternative Splicing GalleryENSG00000156253
Gene ExpressionRWDD2B [ NCBI-GEO ]   RWDD2B [ EBI - ARRAY_EXPRESS ]   RWDD2B [ SEEK ]   RWDD2B [ MEM ]
Gene Expression Viewer (FireBrowse)RWDD2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10069
GTEX Portal (Tissue expression)RWDD2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57060   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57060  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57060
Splice isoforms : SwissVarP57060
PhosPhoSitePlusP57060
Domaine pattern : Prosite (Expaxy)RWD (PS50908)   
Domains : Interpro (EBI)DUF1115    RWD-domain    UBQ-conjugating_enzyme/RWD    UCP038021_RWD   
Domain families : Pfam (Sanger)DUF1115 (PF06544)    RWD (PF05773)   
Domain families : Pfam (NCBI)pfam06544    pfam05773   
Domain families : Smart (EMBL)RWD (SM00591)  
Conserved Domain (NCBI)RWDD2B
DMDM Disease mutations10069
Blocks (Seattle)RWDD2B
PDB (SRS)2DAX   
PDB (PDBSum)2DAX   
PDB (IMB)2DAX   
PDB (RSDB)2DAX   
Structural Biology KnowledgeBase2DAX   
SCOP (Structural Classification of Proteins)2DAX   
CATH (Classification of proteins structures)2DAX   
SuperfamilyP57060
Human Protein AtlasENSG00000156253
Peptide AtlasP57060
HPRD10757
IPIIPI00025685   
Protein Interaction databases
DIP (DOE-UCLA)P57060
IntAct (EBI)P57060
FunCoupENSG00000156253
BioGRIDRWDD2B
STRING (EMBL)RWDD2B
ZODIACRWDD2B
Ontologies - Pathways
QuickGOP57060
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkRWDD2B
Atlas of Cancer Signalling NetworkRWDD2B
Wikipedia pathwaysRWDD2B
Orthology - Evolution
OrthoDB10069
GeneTree (enSembl)ENSG00000156253
Phylogenetic Trees/Animal Genes : TreeFamRWDD2B
HOVERGENP57060
HOGENOMP57060
Homologs : HomoloGeneRWDD2B
Homology/Alignments : Family Browser (UCSC)RWDD2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRWDD2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RWDD2B
dbVarRWDD2B
ClinVarRWDD2B
1000_GenomesRWDD2B 
Exome Variant ServerRWDD2B
ExAC (Exome Aggregation Consortium)RWDD2B (select the gene name)
Genetic variants : HAPMAP10069
Genomic Variants (DGV)RWDD2B [DGVbeta]
DECIPHERRWDD2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRWDD2B 
Mutations
ICGC Data PortalRWDD2B 
TCGA Data PortalRWDD2B 
Broad Tumor PortalRWDD2B
OASIS PortalRWDD2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRWDD2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRWDD2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RWDD2B
DgiDB (Drug Gene Interaction Database)RWDD2B
DoCM (Curated mutations)RWDD2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RWDD2B (select a term)
intoGenRWDD2B
Cancer3DRWDD2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRWDD2B
Genetic Testing Registry RWDD2B
NextProtP57060 [Medical]
TSGene10069
GENETestsRWDD2B
Target ValidationRWDD2B
Huge Navigator RWDD2B [HugePedia]
snp3D : Map Gene to Disease10069
BioCentury BCIQRWDD2B
ClinGenRWDD2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10069
Chemical/Pharm GKB GenePA162402318
Clinical trialRWDD2B
Miscellaneous
canSAR (ICR)RWDD2B (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRWDD2B
EVEXRWDD2B
GoPubMedRWDD2B
iHOPRWDD2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:39:44 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.