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RWDD3 (RWD domain containing 3)

Identity

Alias_symbol (synonym)DKFZP566K023
Other aliasRSUME
HGNC (Hugo) RWDD3
LocusID (NCBI) 25950
Atlas_Id 51010
Location 1p21.3  [Link to chromosome band 1p21]
Location_base_pair Starts at 95234155 and ends at 95247225 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RWDD3 (1p21.3) / CCDC18 (1p22.1)RWDD3 (1p21.3) / TMEM56 (1p21.3)RWDD3 1p21.3 / CCDC18 1p22.1
RWDD3 1p21.3 / TMEM56 1p21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RWDD3   21393
Cards
Entrez_Gene (NCBI)RWDD3  25950  RWD domain containing 3
AliasesRSUME
GeneCards (Weizmann)RWDD3
Ensembl hg19 (Hinxton)ENSG00000122481 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122481 [Gene_View]  chr1:95234155-95247225 [Contig_View]  RWDD3 [Vega]
ICGC DataPortalENSG00000122481
TCGA cBioPortalRWDD3
AceView (NCBI)RWDD3
Genatlas (Paris)RWDD3
WikiGenes25950
SOURCE (Princeton)RWDD3
Genetics Home Reference (NIH)RWDD3
Genomic and cartography
GoldenPath hg38 (UCSC)RWDD3  -     chr1:95234155-95247225 +  1p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RWDD3  -     1p21.3   [Description]    (hg19-Feb_2009)
EnsemblRWDD3 - 1p21.3 [CytoView hg19]  RWDD3 - 1p21.3 [CytoView hg38]
Mapping of homologs : NCBIRWDD3 [Mapview hg19]  RWDD3 [Mapview hg38]
OMIM615875   
Gene and transcription
Genbank (Entrez)AA336253 AA336662 AA825527 AK292665 AK292699
RefSeq transcript (Entrez)NM_001128142 NM_001199682 NM_001278247 NM_001278248 NM_015485
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RWDD3
Cluster EST : UnigeneHs.709591 [ NCBI ]
CGAP (NCI)Hs.709591
Alternative Splicing GalleryENSG00000122481
Gene ExpressionRWDD3 [ NCBI-GEO ]   RWDD3 [ EBI - ARRAY_EXPRESS ]   RWDD3 [ SEEK ]   RWDD3 [ MEM ]
Gene Expression Viewer (FireBrowse)RWDD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25950
GTEX Portal (Tissue expression)RWDD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3V2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3V2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3V2
Splice isoforms : SwissVarQ9Y3V2
PhosPhoSitePlusQ9Y3V2
Domaine pattern : Prosite (Expaxy)RWD (PS50908)   
Domains : Interpro (EBI)RWD-domain    UBQ-conjugating_enzyme/RWD   
Domain families : Pfam (Sanger)RWD (PF05773)   
Domain families : Pfam (NCBI)pfam05773   
Domain families : Smart (EMBL)RWD (SM00591)  
Conserved Domain (NCBI)RWDD3
DMDM Disease mutations25950
Blocks (Seattle)RWDD3
PDB (SRS)2EBK    4Y1L   
PDB (PDBSum)2EBK    4Y1L   
PDB (IMB)2EBK    4Y1L   
PDB (RSDB)2EBK    4Y1L   
Structural Biology KnowledgeBase2EBK    4Y1L   
SCOP (Structural Classification of Proteins)2EBK    4Y1L   
CATH (Classification of proteins structures)2EBK    4Y1L   
SuperfamilyQ9Y3V2
Human Protein AtlasENSG00000122481
Peptide AtlasQ9Y3V2
HPRD11527
IPIIPI00646504   IPI00642965   IPI00790337   IPI00908354   IPI00980160   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3V2
IntAct (EBI)Q9Y3V2
FunCoupENSG00000122481
BioGRIDRWDD3
STRING (EMBL)RWDD3
ZODIACRWDD3
Ontologies - Pathways
QuickGOQ9Y3V2
Ontology : AmiGOprotein binding  nucleus  cytoplasm  negative regulation of NF-kappaB transcription factor activity  positive regulation of protein sumoylation  positive regulation of hypoxia-inducible factor-1alpha signaling pathway  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  negative regulation of NF-kappaB transcription factor activity  positive regulation of protein sumoylation  positive regulation of hypoxia-inducible factor-1alpha signaling pathway  
NDEx NetworkRWDD3
Atlas of Cancer Signalling NetworkRWDD3
Wikipedia pathwaysRWDD3
Orthology - Evolution
OrthoDB25950
GeneTree (enSembl)ENSG00000122481
Phylogenetic Trees/Animal Genes : TreeFamRWDD3
HOVERGENQ9Y3V2
HOGENOMQ9Y3V2
Homologs : HomoloGeneRWDD3
Homology/Alignments : Family Browser (UCSC)RWDD3
Gene fusions - Rearrangements
Fusion : MitelmanRWDD3/CCDC18 [1p21.3/1p22.1]  
Fusion : MitelmanRWDD3/TMEM56 [1p21.3/1p21.3]  [t(1;1)(p21;p21)]  
Fusion: TCGARWDD3 1p21.3 CCDC18 1p22.1 BRCA
Fusion: TCGARWDD3 1p21.3 TMEM56 1p21.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRWDD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RWDD3
dbVarRWDD3
ClinVarRWDD3
1000_GenomesRWDD3 
Exome Variant ServerRWDD3
ExAC (Exome Aggregation Consortium)RWDD3 (select the gene name)
Genetic variants : HAPMAP25950
Genomic Variants (DGV)RWDD3 [DGVbeta]
DECIPHERRWDD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRWDD3 
Mutations
ICGC Data PortalRWDD3 
TCGA Data PortalRWDD3 
Broad Tumor PortalRWDD3
OASIS PortalRWDD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRWDD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRWDD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RWDD3
DgiDB (Drug Gene Interaction Database)RWDD3
DoCM (Curated mutations)RWDD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RWDD3 (select a term)
intoGenRWDD3
Cancer3DRWDD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615875   
Orphanet
MedgenRWDD3
Genetic Testing Registry RWDD3
NextProtQ9Y3V2 [Medical]
TSGene25950
GENETestsRWDD3
Target ValidationRWDD3
Huge Navigator RWDD3 [HugePedia]
snp3D : Map Gene to Disease25950
BioCentury BCIQRWDD3
ClinGenRWDD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25950
Chemical/Pharm GKB GenePA134974302
Clinical trialRWDD3
Miscellaneous
canSAR (ICR)RWDD3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRWDD3
EVEXRWDD3
GoPubMedRWDD3
iHOPRWDD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 12:54:11 CEST 2017

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