Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RWDD4 (RWD domain containing 4)

Identity

Alias_namesFAM28A
RWDD4A
family with sequence similarity 28, member A
RWD domain containing 4A
Alias_symbol (synonym)MGC10198
Other alias
HGNC (Hugo) RWDD4
LocusID (NCBI) 201965
Atlas_Id 72946
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 183639635 and ends at 183659219 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RWDD4   23750
Cards
Entrez_Gene (NCBI)RWDD4  201965  RWD domain containing 4
AliasesFAM28A; RWDD4A
GeneCards (Weizmann)RWDD4
Ensembl hg19 (Hinxton)ENSG00000182552 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182552 [Gene_View]  chr4:183639635-183659219 [Contig_View]  RWDD4 [Vega]
ICGC DataPortalENSG00000182552
TCGA cBioPortalRWDD4
AceView (NCBI)RWDD4
Genatlas (Paris)RWDD4
WikiGenes201965
SOURCE (Princeton)RWDD4
Genetics Home Reference (NIH)RWDD4
Genomic and cartography
GoldenPath hg38 (UCSC)RWDD4  -     chr4:183639635-183659219 -  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RWDD4  -     4q35.1   [Description]    (hg19-Feb_2009)
EnsemblRWDD4 - 4q35.1 [CytoView hg19]  RWDD4 - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBIRWDD4 [Mapview hg19]  RWDD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021702 AK293274 AK315515 AL540937 AL559547
RefSeq transcript (Entrez)NM_001307922 NM_152682
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RWDD4
Cluster EST : UnigeneHs.133337 [ NCBI ]
CGAP (NCI)Hs.133337
Alternative Splicing GalleryENSG00000182552
Gene ExpressionRWDD4 [ NCBI-GEO ]   RWDD4 [ EBI - ARRAY_EXPRESS ]   RWDD4 [ SEEK ]   RWDD4 [ MEM ]
Gene Expression Viewer (FireBrowse)RWDD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201965
GTEX Portal (Tissue expression)RWDD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NW29   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NW29  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NW29
Splice isoforms : SwissVarQ6NW29
PhosPhoSitePlusQ6NW29
Domaine pattern : Prosite (Expaxy)RWD (PS50908)   
Domains : Interpro (EBI)RWD-domain    UBQ-conjugating_enzyme/RWD   
Domain families : Pfam (Sanger)RWD (PF05773)   
Domain families : Pfam (NCBI)pfam05773   
Domain families : Smart (EMBL)RWD (SM00591)  
Conserved Domain (NCBI)RWDD4
DMDM Disease mutations201965
Blocks (Seattle)RWDD4
SuperfamilyQ6NW29
Human Protein AtlasENSG00000182552
Peptide AtlasQ6NW29
HPRD14393
IPIIPI00103252   IPI00939282   IPI00847659   IPI00967530   IPI00968117   IPI00967832   IPI00964821   
Protein Interaction databases
DIP (DOE-UCLA)Q6NW29
IntAct (EBI)Q6NW29
FunCoupENSG00000182552
BioGRIDRWDD4
STRING (EMBL)RWDD4
ZODIACRWDD4
Ontologies - Pathways
QuickGOQ6NW29
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRWDD4
Atlas of Cancer Signalling NetworkRWDD4
Wikipedia pathwaysRWDD4
Orthology - Evolution
OrthoDB201965
GeneTree (enSembl)ENSG00000182552
Phylogenetic Trees/Animal Genes : TreeFamRWDD4
HOVERGENQ6NW29
HOGENOMQ6NW29
Homologs : HomoloGeneRWDD4
Homology/Alignments : Family Browser (UCSC)RWDD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRWDD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RWDD4
dbVarRWDD4
ClinVarRWDD4
1000_GenomesRWDD4 
Exome Variant ServerRWDD4
ExAC (Exome Aggregation Consortium)RWDD4 (select the gene name)
Genetic variants : HAPMAP201965
Genomic Variants (DGV)RWDD4 [DGVbeta]
DECIPHERRWDD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRWDD4 
Mutations
ICGC Data PortalRWDD4 
TCGA Data PortalRWDD4 
Broad Tumor PortalRWDD4
OASIS PortalRWDD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRWDD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRWDD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RWDD4
DgiDB (Drug Gene Interaction Database)RWDD4
DoCM (Curated mutations)RWDD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RWDD4 (select a term)
intoGenRWDD4
Cancer3DRWDD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRWDD4
Genetic Testing Registry RWDD4
NextProtQ6NW29 [Medical]
TSGene201965
GENETestsRWDD4
Target ValidationRWDD4
Huge Navigator RWDD4 [HugePedia]
snp3D : Map Gene to Disease201965
BioCentury BCIQRWDD4
ClinGenRWDD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201965
Chemical/Pharm GKB GenePA142670965
Clinical trialRWDD4
Miscellaneous
canSAR (ICR)RWDD4 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRWDD4
EVEXRWDD4
GoPubMedRWDD4
iHOPRWDD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:37:06 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.