Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RXFP3 (relaxin/insulin like family peptide receptor 3)

Identity

Alias_namesRLN3R1
relaxin 3 receptor 1
relaxin family peptide receptor 3
Alias_symbol (synonym)SALPR
GPCR135
RXFPR3
Other alias
HGNC (Hugo) RXFP3
LocusID (NCBI) 51289
Atlas_Id 51451
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 33936491 and ends at 33939023 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RXFP3   24883
Cards
Entrez_Gene (NCBI)RXFP3  51289  relaxin/insulin like family peptide receptor 3
AliasesGPCR135; RLN3R1; RXFPR3; SALPR
GeneCards (Weizmann)RXFP3
Ensembl hg19 (Hinxton)ENSG00000182631 [Gene_View]  chr5:33936491-33939023 [Contig_View]  RXFP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182631 [Gene_View]  chr5:33936491-33939023 [Contig_View]  RXFP3 [Vega]
ICGC DataPortalENSG00000182631
TCGA cBioPortalRXFP3
AceView (NCBI)RXFP3
Genatlas (Paris)RXFP3
WikiGenes51289
SOURCE (Princeton)RXFP3
Genetics Home Reference (NIH)RXFP3
Genomic and cartography
GoldenPath hg19 (UCSC)RXFP3  -     chr5:33936491-33939023 +  5p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RXFP3  -     5p13.2   [Description]    (hg38-Dec_2013)
EnsemblRXFP3 - 5p13.2 [CytoView hg19]  RXFP3 - 5p13.2 [CytoView hg38]
Mapping of homologs : NCBIRXFP3 [Mapview hg19]  RXFP3 [Mapview hg38]
OMIM609445   
Gene and transcription
Genbank (Entrez)AY394501 BC095526 BC113438 BC113440 D88437
RefSeq transcript (Entrez)NM_016568
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NT_187551 NW_004929321
Consensus coding sequences : CCDS (NCBI)RXFP3
Cluster EST : UnigeneHs.170146 [ NCBI ]
CGAP (NCI)Hs.170146
Alternative Splicing GalleryENSG00000182631
Gene ExpressionRXFP3 [ NCBI-GEO ]   RXFP3 [ EBI - ARRAY_EXPRESS ]   RXFP3 [ SEEK ]   RXFP3 [ MEM ]
Gene Expression Viewer (FireBrowse)RXFP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51289
GTEX Portal (Tissue expression)RXFP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSD7
Splice isoforms : SwissVarQ9NSD7
PhosPhoSitePlusQ9NSD7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)RXFP3
DMDM Disease mutations51289
Blocks (Seattle)RXFP3
SuperfamilyQ9NSD7
Human Protein AtlasENSG00000182631
Peptide AtlasQ9NSD7
HPRD17979
IPIIPI00009828   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSD7
IntAct (EBI)Q9NSD7
FunCoupENSG00000182631
BioGRIDRXFP3
STRING (EMBL)RXFP3
ZODIACRXFP3
Ontologies - Pathways
QuickGOQ9NSD7
Ontology : AmiGOG-protein coupled receptor activity  cytosol  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  phospholipase C-activating G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  G-protein coupled peptide receptor activity  positive regulation of cytokinesis  positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway  
Ontology : EGO-EBIG-protein coupled receptor activity  cytosol  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  phospholipase C-activating G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  G-protein coupled peptide receptor activity  positive regulation of cytokinesis  positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway  
NDEx NetworkRXFP3
Atlas of Cancer Signalling NetworkRXFP3
Wikipedia pathwaysRXFP3
Orthology - Evolution
OrthoDB51289
GeneTree (enSembl)ENSG00000182631
Phylogenetic Trees/Animal Genes : TreeFamRXFP3
HOVERGENQ9NSD7
HOGENOMQ9NSD7
Homologs : HomoloGeneRXFP3
Homology/Alignments : Family Browser (UCSC)RXFP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRXFP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RXFP3
dbVarRXFP3
ClinVarRXFP3
1000_GenomesRXFP3 
Exome Variant ServerRXFP3
ExAC (Exome Aggregation Consortium)RXFP3 (select the gene name)
Genetic variants : HAPMAP51289
Genomic Variants (DGV)RXFP3 [DGVbeta]
DECIPHER (Syndromes)5:33936491-33939023  ENSG00000182631
CONAN: Copy Number AnalysisRXFP3 
Mutations
ICGC Data PortalRXFP3 
TCGA Data PortalRXFP3 
Broad Tumor PortalRXFP3
OASIS PortalRXFP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRXFP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRXFP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RXFP3
DgiDB (Drug Gene Interaction Database)RXFP3
DoCM (Curated mutations)RXFP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RXFP3 (select a term)
intoGenRXFP3
Cancer3DRXFP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609445   
Orphanet
MedgenRXFP3
Genetic Testing Registry RXFP3
NextProtQ9NSD7 [Medical]
TSGene51289
GENETestsRXFP3
Huge Navigator RXFP3 [HugePedia]
snp3D : Map Gene to Disease51289
BioCentury BCIQRXFP3
ClinGenRXFP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51289
Chemical/Pharm GKB GenePA134868535
Clinical trialRXFP3
Miscellaneous
canSAR (ICR)RXFP3 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRXFP3
EVEXRXFP3
GoPubMedRXFP3
iHOPRXFP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:18:11 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.