Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

S100A11 (S100 calcium binding protein A11)

Identity

Other namesMLN70
S100C
HGNC (Hugo) S100A11
LocusID (NCBI) 6282
Location 1q21.3
Location_base_pair Starts at 152004982 and ends at 152009511 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)S100A11   10488
Entrez_Gene (NCBI)S100A11  6282  S100 calcium binding protein A11
Cards
GeneCards (Weizmann)S100A11
Ensembl (Hinxton)ENSG00000163191 [Gene_View]  chr1:152004982-152009511 [Contig_View]  S100A11 [Vega]
AceView (NCBI)S100A11
Genatlas (Paris)S100A11
SOURCE (Stanford)NM_005620
Genomic and cartography
GoldenPath (UCSC)S100A11  -  1q21.3   chr1:152004982-152009511 -  1q21.3   [Description]    (hg19-Feb_2009)
EnsemblS100A11 - 1q21.3 [CytoView]
Mapping of homologs : NCBIS100A11 [Mapview]
OMIM603114   
Gene and transcription
Genbank (Entrez)AK312184 BC001410 BC014354 BT009912 D38583
RefSeq transcript (SRS)NM_005620
RefSeq transcript (Entrez)NM_005620
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838529 NW_004077999
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838529 NW_004077999
Consensus coding sequences : CCDS (NCBI)S100A11
Cluster EST : UnigeneHs.417004 [ SRS ] Hs.417004 [ NCBI ]
CGAP (NCI)Hs.417004
Alternative Splicing : Fast-db (Paris)GSHG0002521
Alternative Splicing GalleryENSG00000163191
Gene ExpressionS100A11 [ NCBI-GEO ]   S100A11 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31949 (SRS) P31949 (Uniprot)
NextProtP31949
With graphics : InterProP31949
Splice isoforms : SwissVarP31949(Swissvar)
Domaine pattern : Prosite (SRS)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    S100_CABP (PS00303)   
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    S100_CABP (PS00303)   
Domains : Interpro (SRS)EF-hand-like_dom    EF_Hand_1_Ca_BS    EF_hand_dom    S100/CaBP-9k_CS    S100_Ca-bd_sub   
Domains : Interpro (EBI)EF-hand-like_dom    EF_Hand_1_Ca_BS    EF_hand_dom    S100/CaBP-9k_CS    S100_Ca-bd_sub   
Related proteins : CluSTrP31949
Domain families : Pfam (SRS)efhand (PF00036)    S_100 (PF01023)   
Domain families : Pfam (Sanger)efhand (PF00036)    S_100 (PF01023)   
Domain families : Pfam (NCBI)pfam00036    pfam01023   
DMDM6282
Blocks (Seattle)P31949
PDB (SRS)1V4Z    1V50   
PDB (PDBSum)1V4Z    1V50   
PDB (IMB)1V4Z    1V50   
PDB (RSDB)1V4Z    1V50   
Human Protein AtlasENSG00000163191
HPRD04385
IPIIPI00013895   
Protein Interaction databases
DIP (DOE-UCLA)P31949
IntAct (EBI)P31949
FunCoupENSG00000163191
REACTOMES100A11
Protein Interaction Database6282
BioGRIDS100A11
InParanoidP31949
Interologous Interaction database P31949
IntegromeDBS100A11
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)S100A11
SNP (GeneSNP Utah)S100A11
SNP : HGBaseS100A11
Genetic variants : HAPMAPS100A11
Somatic Mutations in Cancer : COSMICS100A11 
CONAN: Copy Number AnalysisS100A11 
Mutations and Diseases : HGMDS100A11
OMIM603114   
GENETests603114   
Disease Genetic AssociationS100A11
Huge Navigator S100A11 [HugePedia]  S100A11 [HugeCancerGEM]
Genomic VariantsS100A11  S100A11 [DGVbeta]
ClinVarS100A11
snp3D : Map Gene to Disease6282
General knowledge
Homologs : HomoloGeneS100A11
Homology/Alignments : Family Browser (UCSC)S100A11
Phylogenetic Trees/Animal Genes : TreeFamS100A11
Chemical/Protein Interactions : CTD6282
Chemical/Pharm GKB GenePA34900
Clinical trialS100A11
Cancer Resource (Charite)ENSG00000163191
Ontology : AmiGOruffle  calcium ion binding  protein binding  nucleus  nucleolus  cytoplasm  cytoplasm  signal transduction  negative regulation of DNA replication  negative regulation of cell proliferation  protein homodimerization activity  S100 protein binding  calcium-dependent protein binding  
Ontology : EGO-EBIruffle  calcium ion binding  protein binding  nucleus  nucleolus  cytoplasm  cytoplasm  signal transduction  negative regulation of DNA replication  negative regulation of cell proliferation  protein homodimerization activity  S100 protein binding  calcium-dependent protein binding  
Other databases
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
PubGeneS100A11
iHOPS100A11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:52:16 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.