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S100A11 (S100 calcium binding protein A11)

Identity

Alias_namesS100 calcium-binding protein A11 (calgizzarin)
S100 calcium binding protein A11 (calgizzarin)
Alias_symbol (synonym)S100C
HGNC (Hugo) S100A11
LocusID (NCBI) 6282
Atlas_Id 42190
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152004982 and ends at 152009511 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
S100A11 (1q21.3) / HLA-C (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)S100A11   10488
Cards
Entrez_Gene (NCBI)S100A11  6282  S100 calcium binding protein A11
AliasesHEL-S-43; MLN70; S100C
GeneCards (Weizmann)S100A11
Ensembl hg19 (Hinxton)ENSG00000163191 [Gene_View]  chr1:152004982-152009511 [Contig_View]  S100A11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163191 [Gene_View]  chr1:152004982-152009511 [Contig_View]  S100A11 [Vega]
ICGC DataPortalENSG00000163191
TCGA cBioPortalS100A11
AceView (NCBI)S100A11
Genatlas (Paris)S100A11
WikiGenes6282
SOURCE (Princeton)S100A11
Genetics Home Reference (NIH)S100A11
Genomic and cartography
GoldenPath hg19 (UCSC)S100A11  -     chr1:152004982-152009511 -  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)S100A11  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblS100A11 - 1q21.3 [CytoView hg19]  S100A11 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIS100A11 [Mapview hg19]  S100A11 [Mapview hg38]
OMIM603114   
Gene and transcription
Genbank (Entrez)AK312184 BC001410 BC014354 BT009912 D38583
RefSeq transcript (Entrez)NM_005620
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)S100A11
Cluster EST : UnigeneHs.417004 [ NCBI ]
CGAP (NCI)Hs.417004
Alternative Splicing GalleryENSG00000163191
Gene ExpressionS100A11 [ NCBI-GEO ]   S100A11 [ EBI - ARRAY_EXPRESS ]   S100A11 [ SEEK ]   S100A11 [ MEM ]
Gene Expression Viewer (FireBrowse)S100A11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6282
GTEX Portal (Tissue expression)S100A11
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31949   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31949  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31949
Splice isoforms : SwissVarP31949
PhosPhoSitePlusP31949
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    S100_CABP (PS00303)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    S100/CaBP-9k_CS    S100_Ca-bd_sub    S100A11   
Domain families : Pfam (Sanger)EF-hand_1 (PF00036)    S_100 (PF01023)   
Domain families : Pfam (NCBI)pfam00036    pfam01023   
Conserved Domain (NCBI)S100A11
DMDM Disease mutations6282
Blocks (Seattle)S100A11
PDB (SRS)1V4Z    1V50    2LUC   
PDB (PDBSum)1V4Z    1V50    2LUC   
PDB (IMB)1V4Z    1V50    2LUC   
PDB (RSDB)1V4Z    1V50    2LUC   
Structural Biology KnowledgeBase1V4Z    1V50    2LUC   
SCOP (Structural Classification of Proteins)1V4Z    1V50    2LUC   
CATH (Classification of proteins structures)1V4Z    1V50    2LUC   
SuperfamilyP31949
Human Protein AtlasENSG00000163191
Peptide AtlasP31949
HPRD04385
IPIIPI00013895   
Protein Interaction databases
DIP (DOE-UCLA)P31949
IntAct (EBI)P31949
FunCoupENSG00000163191
BioGRIDS100A11
STRING (EMBL)S100A11
ZODIACS100A11
Ontologies - Pathways
QuickGOP31949
Ontology : AmiGOruffle  calcium ion binding  protein binding  extracellular space  nucleus  cytoplasm  cytoplasm  signal transduction  negative regulation of DNA replication  negative regulation of cell proliferation  protein homodimerization activity  S100 protein binding  calcium-dependent protein binding  extracellular exosome  
Ontology : EGO-EBIruffle  calcium ion binding  protein binding  extracellular space  nucleus  cytoplasm  cytoplasm  signal transduction  negative regulation of DNA replication  negative regulation of cell proliferation  protein homodimerization activity  S100 protein binding  calcium-dependent protein binding  extracellular exosome  
NDEx NetworkS100A11
Atlas of Cancer Signalling NetworkS100A11
Wikipedia pathwaysS100A11
Orthology - Evolution
OrthoDB6282
GeneTree (enSembl)ENSG00000163191
Phylogenetic Trees/Animal Genes : TreeFamS100A11
HOVERGENP31949
HOGENOMP31949
Homologs : HomoloGeneS100A11
Homology/Alignments : Family Browser (UCSC)S100A11
Gene fusions - Rearrangements
Fusion Cancer (Beijing)S100A11 [1q21.3]  -  HLA-C [6p21.33]  [FUSC003218]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerS100A11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)S100A11
dbVarS100A11
ClinVarS100A11
1000_GenomesS100A11 
Exome Variant ServerS100A11
ExAC (Exome Aggregation Consortium)S100A11 (select the gene name)
Genetic variants : HAPMAP6282
Genomic Variants (DGV)S100A11 [DGVbeta]
DECIPHER (Syndromes)1:152004982-152009511  ENSG00000163191
CONAN: Copy Number AnalysisS100A11 
Mutations
ICGC Data PortalS100A11 
TCGA Data PortalS100A11 
Broad Tumor PortalS100A11
OASIS PortalS100A11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICS100A11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDS100A11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch S100A11
DgiDB (Drug Gene Interaction Database)S100A11
DoCM (Curated mutations)S100A11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)S100A11 (select a term)
intoGenS100A11
Cancer3DS100A11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603114   
Orphanet
MedgenS100A11
Genetic Testing Registry S100A11
NextProtP31949 [Medical]
TSGene6282
GENETestsS100A11
Huge Navigator S100A11 [HugePedia]
snp3D : Map Gene to Disease6282
BioCentury BCIQS100A11
ClinGenS100A11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6282
Chemical/Pharm GKB GenePA34900
Clinical trialS100A11
Miscellaneous
canSAR (ICR)S100A11 (select the gene name)
Probes
Litterature
PubMed70 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineS100A11
EVEXS100A11
GoPubMedS100A11
iHOPS100A11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:50:31 CET 2016

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