Atlas of Genetics and Cytogenetics in Oncology and Haematology


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S100A16 (S100 calcium binding protein A16)

Identity

Alias_symbol (synonym)S100F
DT1P1A7
MGC17528
Other aliasAAG13
HGNC (Hugo) S100A16
LocusID (NCBI) 140576
Atlas_Id 55330
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153606883 and ends at 153609355 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GTF2F1 (19p13.3) / S100A16 (1q21.3)IL4R (16p12.1) / S100A16 (1q21.3)RPL14 (3p22.1) / S100A16 (1q21.3)
S100A16 (1q21.3) / HTATSF1 (Xq26.3)S100A16 (1q21.3) / PDE4B (1p31.3)S100A16 (1q21.3) / S100A16 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)S100A16   20441
Cards
Entrez_Gene (NCBI)S100A16  140576  S100 calcium binding protein A16
AliasesAAG13; DT1P1A7; S100F
GeneCards (Weizmann)S100A16
Ensembl hg19 (Hinxton)ENSG00000188643 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188643 [Gene_View]  chr1:153606883-153609355 [Contig_View]  S100A16 [Vega]
ICGC DataPortalENSG00000188643
TCGA cBioPortalS100A16
AceView (NCBI)S100A16
Genatlas (Paris)S100A16
WikiGenes140576
SOURCE (Princeton)S100A16
Genetics Home Reference (NIH)S100A16
Genomic and cartography
GoldenPath hg38 (UCSC)S100A16  -     chr1:153606883-153609355 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)S100A16  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblS100A16 - 1q21.3 [CytoView hg19]  S100A16 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIS100A16 [Mapview hg19]  S100A16 [Mapview hg38]
OMIM617437   
Gene and transcription
Genbank (Entrez)AI673616 AK290804 AW954845 AY221961 AY762098
RefSeq transcript (Entrez)NM_001317007 NM_001317008 NM_080388
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)S100A16
Cluster EST : UnigeneHs.515714 [ NCBI ]
CGAP (NCI)Hs.515714
Alternative Splicing GalleryENSG00000188643
Gene ExpressionS100A16 [ NCBI-GEO ]   S100A16 [ EBI - ARRAY_EXPRESS ]   S100A16 [ SEEK ]   S100A16 [ MEM ]
Gene Expression Viewer (FireBrowse)S100A16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140576
GTEX Portal (Tissue expression)S100A16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FQ6
Splice isoforms : SwissVarQ96FQ6
PhosPhoSitePlusQ96FQ6
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    S100_CABP (PS00303)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    S100/CaBP-9k_CS    S100_Ca-bd_sub   
Domain families : Pfam (Sanger)EF-hand_5 (PF13202)    S_100 (PF01023)   
Domain families : Pfam (NCBI)pfam13202    pfam01023   
Domain families : Smart (EMBL)S_100 (SM01394)  
Conserved Domain (NCBI)S100A16
DMDM Disease mutations140576
Blocks (Seattle)S100A16
PDB (SRS)2L50    2L51    3NXA   
PDB (PDBSum)2L50    2L51    3NXA   
PDB (IMB)2L50    2L51    3NXA   
PDB (RSDB)2L50    2L51    3NXA   
Structural Biology KnowledgeBase2L50    2L51    3NXA   
SCOP (Structural Classification of Proteins)2L50    2L51    3NXA   
CATH (Classification of proteins structures)2L50    2L51    3NXA   
SuperfamilyQ96FQ6
Human Protein AtlasENSG00000188643
Peptide AtlasQ96FQ6
HPRD11529
IPIIPI00062120   
Protein Interaction databases
DIP (DOE-UCLA)Q96FQ6
IntAct (EBI)Q96FQ6
FunCoupENSG00000188643
BioGRIDS100A16
STRING (EMBL)S100A16
ZODIACS100A16
Ontologies - Pathways
QuickGOQ96FQ6
Ontology : AmiGORNA binding  calcium ion binding  protein binding  nucleolus  cytosol  plasma membrane  protein homodimerization activity  response to calcium ion  extracellular exosome  
Ontology : EGO-EBIRNA binding  calcium ion binding  protein binding  nucleolus  cytosol  plasma membrane  protein homodimerization activity  response to calcium ion  extracellular exosome  
NDEx NetworkS100A16
Atlas of Cancer Signalling NetworkS100A16
Wikipedia pathwaysS100A16
Orthology - Evolution
OrthoDB140576
GeneTree (enSembl)ENSG00000188643
Phylogenetic Trees/Animal Genes : TreeFamS100A16
HOVERGENQ96FQ6
HOGENOMQ96FQ6
Homologs : HomoloGeneS100A16
Homology/Alignments : Family Browser (UCSC)S100A16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerS100A16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)S100A16
dbVarS100A16
ClinVarS100A16
1000_GenomesS100A16 
Exome Variant ServerS100A16
ExAC (Exome Aggregation Consortium)S100A16 (select the gene name)
Genetic variants : HAPMAP140576
Genomic Variants (DGV)S100A16 [DGVbeta]
DECIPHERS100A16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisS100A16 
Mutations
ICGC Data PortalS100A16 
TCGA Data PortalS100A16 
Broad Tumor PortalS100A16
OASIS PortalS100A16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICS100A16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDS100A16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch S100A16
DgiDB (Drug Gene Interaction Database)S100A16
DoCM (Curated mutations)S100A16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)S100A16 (select a term)
intoGenS100A16
Cancer3DS100A16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617437   
Orphanet
MedgenS100A16
Genetic Testing Registry S100A16
NextProtQ96FQ6 [Medical]
TSGene140576
GENETestsS100A16
Huge Navigator S100A16 [HugePedia]
snp3D : Map Gene to Disease140576
BioCentury BCIQS100A16
ClinGenS100A16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140576
Chemical/Pharm GKB GenePA134931606
Clinical trialS100A16
Miscellaneous
canSAR (ICR)S100A16 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineS100A16
EVEXS100A16
GoPubMedS100A16
iHOPS100A16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:35:57 CEST 2017

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