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S100A3 (S100 calcium binding protein A3)

Identity

Alias_namesS100E
S100 calcium-binding protein A3
Other alias
HGNC (Hugo) S100A3
LocusID (NCBI) 6274
Atlas_Id 72950
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153519809 and ends at 153521734 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GTF2F2 (13q14.12) / S100A3 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)S100A3   10493
Cards
Entrez_Gene (NCBI)S100A3  6274  S100 calcium binding protein A3
AliasesS100E
GeneCards (Weizmann)S100A3
Ensembl hg19 (Hinxton)ENSG00000188015 [Gene_View]  chr1:153519809-153521734 [Contig_View]  S100A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188015 [Gene_View]  chr1:153519809-153521734 [Contig_View]  S100A3 [Vega]
ICGC DataPortalENSG00000188015
TCGA cBioPortalS100A3
AceView (NCBI)S100A3
Genatlas (Paris)S100A3
WikiGenes6274
SOURCE (Princeton)S100A3
Genetics Home Reference (NIH)S100A3
Genomic and cartography
GoldenPath hg19 (UCSC)S100A3  -     chr1:153519809-153521734 -  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)S100A3  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblS100A3 - 1q21.3 [CytoView hg19]  S100A3 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIS100A3 [Mapview hg19]  S100A3 [Mapview hg38]
OMIM176992   
Gene and transcription
Genbank (Entrez)BC012893 BT006955 CR542163 CR542185 DQ891433
RefSeq transcript (Entrez)NM_002960
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_027993 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)S100A3
Cluster EST : UnigeneHs.557609 [ NCBI ]
CGAP (NCI)Hs.557609
Alternative Splicing GalleryENSG00000188015
Gene ExpressionS100A3 [ NCBI-GEO ]   S100A3 [ EBI - ARRAY_EXPRESS ]   S100A3 [ SEEK ]   S100A3 [ MEM ]
Gene Expression Viewer (FireBrowse)S100A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6274
GTEX Portal (Tissue expression)S100A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP33764   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP33764  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP33764
Splice isoforms : SwissVarP33764
PhosPhoSitePlusP33764
Domaine pattern : Prosite (Expaxy)S100_CABP (PS00303)   
Domains : Interpro (EBI)EF-hand-dom_pair    S100/CaBP-9k_CS    S100_Ca-bd_sub    S100A3   
Domain families : Pfam (Sanger)S_100 (PF01023)   
Domain families : Pfam (NCBI)pfam01023   
Conserved Domain (NCBI)S100A3
DMDM Disease mutations6274
Blocks (Seattle)S100A3
PDB (SRS)1KSO    3NSI    3NSK    3NSL    3NSO   
PDB (PDBSum)1KSO    3NSI    3NSK    3NSL    3NSO   
PDB (IMB)1KSO    3NSI    3NSK    3NSL    3NSO   
PDB (RSDB)1KSO    3NSI    3NSK    3NSL    3NSO   
Structural Biology KnowledgeBase1KSO    3NSI    3NSK    3NSL    3NSO   
SCOP (Structural Classification of Proteins)1KSO    3NSI    3NSK    3NSL    3NSO   
CATH (Classification of proteins structures)1KSO    3NSI    3NSK    3NSL    3NSO   
SuperfamilyP33764
Human Protein AtlasENSG00000188015
Peptide AtlasP33764
HPRD01507
IPIIPI00016752   
Protein Interaction databases
DIP (DOE-UCLA)P33764
IntAct (EBI)P33764
FunCoupENSG00000188015
BioGRIDS100A3
STRING (EMBL)S100A3
ZODIACS100A3
Ontologies - Pathways
QuickGOP33764
Ontology : AmiGOcalcium ion binding  nucleolus  cytoplasm  zinc ion binding  
Ontology : EGO-EBIcalcium ion binding  nucleolus  cytoplasm  zinc ion binding  
NDEx NetworkS100A3
Atlas of Cancer Signalling NetworkS100A3
Wikipedia pathwaysS100A3
Orthology - Evolution
OrthoDB6274
GeneTree (enSembl)ENSG00000188015
Phylogenetic Trees/Animal Genes : TreeFamS100A3
HOVERGENP33764
HOGENOMP33764
Homologs : HomoloGeneS100A3
Homology/Alignments : Family Browser (UCSC)S100A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerS100A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)S100A3
dbVarS100A3
ClinVarS100A3
1000_GenomesS100A3 
Exome Variant ServerS100A3
ExAC (Exome Aggregation Consortium)S100A3 (select the gene name)
Genetic variants : HAPMAP6274
Genomic Variants (DGV)S100A3 [DGVbeta]
DECIPHER (Syndromes)1:153519809-153521734  ENSG00000188015
CONAN: Copy Number AnalysisS100A3 
Mutations
ICGC Data PortalS100A3 
TCGA Data PortalS100A3 
Broad Tumor PortalS100A3
OASIS PortalS100A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICS100A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDS100A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch S100A3
DgiDB (Drug Gene Interaction Database)S100A3
DoCM (Curated mutations)S100A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)S100A3 (select a term)
intoGenS100A3
Cancer3DS100A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176992   
Orphanet
MedgenS100A3
Genetic Testing Registry S100A3
NextProtP33764 [Medical]
TSGene6274
GENETestsS100A3
Huge Navigator S100A3 [HugePedia]
snp3D : Map Gene to Disease6274
BioCentury BCIQS100A3
ClinGenS100A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6274
Chemical/Pharm GKB GenePA34905
Clinical trialS100A3
Miscellaneous
canSAR (ICR)S100A3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineS100A3
EVEXS100A3
GoPubMedS100A3
iHOPS100A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:11 CET 2017

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