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S100A5 (S100 calcium binding protein A5)

Identity

Alias_namesS100D
S100 calcium-binding protein A5
Other alias
HGNC (Hugo) S100A5
LocusID (NCBI) 6276
Atlas_Id 56185
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153509623 and ends at 153514241 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)S100A5   10495
Cards
Entrez_Gene (NCBI)S100A5  6276  S100 calcium binding protein A5
AliasesS100D
GeneCards (Weizmann)S100A5
Ensembl hg19 (Hinxton)ENSG00000196420 [Gene_View]  chr1:153509623-153514241 [Contig_View]  S100A5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196420 [Gene_View]  chr1:153509623-153514241 [Contig_View]  S100A5 [Vega]
ICGC DataPortalENSG00000196420
TCGA cBioPortalS100A5
AceView (NCBI)S100A5
Genatlas (Paris)S100A5
WikiGenes6276
SOURCE (Princeton)S100A5
Genetics Home Reference (NIH)S100A5
Genomic and cartography
GoldenPath hg19 (UCSC)S100A5  -     chr1:153509623-153514241 -  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)S100A5  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblS100A5 - 1q21.3 [CytoView hg19]  S100A5 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIS100A5 [Mapview hg19]  S100A5 [Mapview hg38]
OMIM176991   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_002962
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)S100A5
Cluster EST : UnigeneHs.2960 [ NCBI ]
CGAP (NCI)Hs.2960
Alternative Splicing GalleryENSG00000196420
Gene ExpressionS100A5 [ NCBI-GEO ]   S100A5 [ EBI - ARRAY_EXPRESS ]   S100A5 [ SEEK ]   S100A5 [ MEM ]
Gene Expression Viewer (FireBrowse)S100A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6276
GTEX Portal (Tissue expression)S100A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP33763   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP33763  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP33763
Splice isoforms : SwissVarP33763
PhosPhoSitePlusP33763
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    S100_CABP (PS00303)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    S100-A5    S100/CaBP-9k_CS    S100_Ca-bd_sub   
Domain families : Pfam (Sanger)S_100 (PF01023)   
Domain families : Pfam (NCBI)pfam01023   
Domain families : Smart (EMBL)EFh (SM00054)  S_100 (SM01394)  
Conserved Domain (NCBI)S100A5
DMDM Disease mutations6276
Blocks (Seattle)S100A5
PDB (SRS)2KAX    2KAY    4DIR   
PDB (PDBSum)2KAX    2KAY    4DIR   
PDB (IMB)2KAX    2KAY    4DIR   
PDB (RSDB)2KAX    2KAY    4DIR   
Structural Biology KnowledgeBase2KAX    2KAY    4DIR   
SCOP (Structural Classification of Proteins)2KAX    2KAY    4DIR   
CATH (Classification of proteins structures)2KAX    2KAY    4DIR   
SuperfamilyP33763
Human Protein AtlasENSG00000196420
Peptide AtlasP33763
HPRD01506
IPIIPI00219805   
Protein Interaction databases
DIP (DOE-UCLA)P33763
IntAct (EBI)P33763
FunCoupENSG00000196420
BioGRIDS100A5
STRING (EMBL)S100A5
ZODIACS100A5
Ontologies - Pathways
QuickGOP33763
Ontology : AmiGOcopper ion binding  calcium ion binding  nucleus  zinc ion binding  protein homodimerization activity  neuronal cell body  
Ontology : EGO-EBIcopper ion binding  calcium ion binding  nucleus  zinc ion binding  protein homodimerization activity  neuronal cell body  
NDEx NetworkS100A5
Atlas of Cancer Signalling NetworkS100A5
Wikipedia pathwaysS100A5
Orthology - Evolution
OrthoDB6276
GeneTree (enSembl)ENSG00000196420
Phylogenetic Trees/Animal Genes : TreeFamS100A5
HOVERGENP33763
HOGENOMP33763
Homologs : HomoloGeneS100A5
Homology/Alignments : Family Browser (UCSC)S100A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerS100A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)S100A5
dbVarS100A5
ClinVarS100A5
1000_GenomesS100A5 
Exome Variant ServerS100A5
ExAC (Exome Aggregation Consortium)S100A5 (select the gene name)
Genetic variants : HAPMAP6276
Genomic Variants (DGV)S100A5 [DGVbeta]
DECIPHER (Syndromes)1:153509623-153514241  ENSG00000196420
CONAN: Copy Number AnalysisS100A5 
Mutations
ICGC Data PortalS100A5 
TCGA Data PortalS100A5 
Broad Tumor PortalS100A5
OASIS PortalS100A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICS100A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDS100A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch S100A5
DgiDB (Drug Gene Interaction Database)S100A5
DoCM (Curated mutations)S100A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)S100A5 (select a term)
intoGenS100A5
Cancer3DS100A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176991   
Orphanet
MedgenS100A5
Genetic Testing Registry S100A5
NextProtP33763 [Medical]
TSGene6276
GENETestsS100A5
Huge Navigator S100A5 [HugePedia]
snp3D : Map Gene to Disease6276
BioCentury BCIQS100A5
ClinGenS100A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6276
Chemical/Pharm GKB GenePA34907
Clinical trialS100A5
Miscellaneous
canSAR (ICR)S100A5 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineS100A5
EVEXS100A5
GoPubMedS100A5
iHOPS100A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:18:13 CEST 2017

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