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S100A7A (S100 calcium binding protein A7A)

Identity

Alias_namesS100A15
S100A7L1
S100 calcium binding protein A15
S100 calcium binding protein A7-like 1
Alias_symbol (synonym)S100A7f
Other aliasNICE-2
NICE2
HGNC (Hugo) S100A7A
LocusID (NCBI) 338324
Atlas_Id 72952
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153416524 and ends at 153423225 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)S100A7A   21657
Cards
Entrez_Gene (NCBI)S100A7A  338324  S100 calcium binding protein A7A
AliasesNICE-2; NICE2; S100A15; S100A7L1; 
S100A7f
GeneCards (Weizmann)S100A7A
Ensembl hg19 (Hinxton)ENSG00000184330 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184330 [Gene_View]  chr1:153416524-153423225 [Contig_View]  S100A7A [Vega]
ICGC DataPortalENSG00000184330
TCGA cBioPortalS100A7A
AceView (NCBI)S100A7A
Genatlas (Paris)S100A7A
WikiGenes338324
SOURCE (Princeton)S100A7A
Genetics Home Reference (NIH)S100A7A
Genomic and cartography
GoldenPath hg38 (UCSC)S100A7A  -     chr1:153416524-153423225 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)S100A7A  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblS100A7A - 1q21.3 [CytoView hg19]  S100A7A - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIS100A7A [Mapview hg19]  S100A7A [Mapview hg38]
OMIM617427   
Gene and transcription
Genbank (Entrez)AJ243672 AJ243673 AY189118 AY189119 BC040254
RefSeq transcript (Entrez)NM_176823
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)S100A7A
Cluster EST : UnigeneHs.442337 [ NCBI ]
CGAP (NCI)Hs.442337
Alternative Splicing GalleryENSG00000184330
Gene ExpressionS100A7A [ NCBI-GEO ]   S100A7A [ EBI - ARRAY_EXPRESS ]   S100A7A [ SEEK ]   S100A7A [ MEM ]
Gene Expression Viewer (FireBrowse)S100A7A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338324
GTEX Portal (Tissue expression)S100A7A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SG5
Splice isoforms : SwissVarQ86SG5
PhosPhoSitePlusQ86SG5
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    S100_CABP (PS00303)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    S-100_dom    S100/CaBP-9k_CS    S100_Ca-bd_sub    S100A7   
Domain families : Pfam (Sanger)S_100 (PF01023)   
Domain families : Pfam (NCBI)pfam01023   
Domain families : Smart (EMBL)S_100 (SM01394)  
Conserved Domain (NCBI)S100A7A
DMDM Disease mutations338324
Blocks (Seattle)S100A7A
PDB (SRS)4AQI   
PDB (PDBSum)4AQI   
PDB (IMB)4AQI   
PDB (RSDB)4AQI   
Structural Biology KnowledgeBase4AQI   
SCOP (Structural Classification of Proteins)4AQI   
CATH (Classification of proteins structures)4AQI   
SuperfamilyQ86SG5
Human Protein AtlasENSG00000184330
Peptide AtlasQ86SG5
HPRD15290
IPIIPI00328396   
Protein Interaction databases
DIP (DOE-UCLA)Q86SG5
IntAct (EBI)Q86SG5
FunCoupENSG00000184330
BioGRIDS100A7A
STRING (EMBL)S100A7A
ZODIACS100A7A
Ontologies - Pathways
QuickGOQ86SG5
Ontology : AmiGOcalcium ion binding  cytoplasm  protein self-association  transition metal ion binding  
Ontology : EGO-EBIcalcium ion binding  cytoplasm  protein self-association  transition metal ion binding  
NDEx NetworkS100A7A
Atlas of Cancer Signalling NetworkS100A7A
Wikipedia pathwaysS100A7A
Orthology - Evolution
OrthoDB338324
GeneTree (enSembl)ENSG00000184330
Phylogenetic Trees/Animal Genes : TreeFamS100A7A
HOVERGENQ86SG5
HOGENOMQ86SG5
Homologs : HomoloGeneS100A7A
Homology/Alignments : Family Browser (UCSC)S100A7A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerS100A7A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)S100A7A
dbVarS100A7A
ClinVarS100A7A
1000_GenomesS100A7A 
Exome Variant ServerS100A7A
ExAC (Exome Aggregation Consortium)S100A7A (select the gene name)
Genetic variants : HAPMAP338324
Genomic Variants (DGV)S100A7A [DGVbeta]
DECIPHERS100A7A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisS100A7A 
Mutations
ICGC Data PortalS100A7A 
TCGA Data PortalS100A7A 
Broad Tumor PortalS100A7A
OASIS PortalS100A7A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICS100A7A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDS100A7A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch S100A7A
DgiDB (Drug Gene Interaction Database)S100A7A
DoCM (Curated mutations)S100A7A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)S100A7A (select a term)
intoGenS100A7A
Cancer3DS100A7A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617427   
Orphanet
MedgenS100A7A
Genetic Testing Registry S100A7A
NextProtQ86SG5 [Medical]
TSGene338324
GENETestsS100A7A
Target ValidationS100A7A
Huge Navigator S100A7A [HugePedia]
snp3D : Map Gene to Disease338324
BioCentury BCIQS100A7A
ClinGenS100A7A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338324
Chemical/Pharm GKB GenePA162402333
Clinical trialS100A7A
Miscellaneous
canSAR (ICR)S100A7A (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineS100A7A
EVEXS100A7A
GoPubMedS100A7A
iHOPS100A7A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:06 CEST 2017

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