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S100A7L2 (S100 calcium binding protein A7 like 2)

Identity

Alias_namesS100 calcium binding protein A7-like 2
Alias_symbol (synonym)s100a7b
Other aliasS100a7b
HGNC (Hugo) S100A7L2
LocusID (NCBI) 645922
Atlas_Id 72953
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153436995 and ends at 153440027 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)S100A7L2   21655
Cards
Entrez_Gene (NCBI)S100A7L2  645922  S100 calcium binding protein A7 like 2
AliasesS100a7b
GeneCards (Weizmann)S100A7L2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:153436995-153440027 [Contig_View]  S100A7L2 [Vega]
TCGA cBioPortalS100A7L2
AceView (NCBI)S100A7L2
Genatlas (Paris)S100A7L2
WikiGenes645922
SOURCE (Princeton)S100A7L2
Genetics Home Reference (NIH)S100A7L2
Genomic and cartography
GoldenPath hg38 (UCSC)S100A7L2  -     chr1:153436995-153440027 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)S100A7L2  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblS100A7L2 - 1q21.3 [CytoView hg19]  S100A7L2 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIS100A7L2 [Mapview hg19]  S100A7L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC148518 BC153115
RefSeq transcript (Entrez)NM_001045479
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)S100A7L2
Cluster EST : UnigeneHs.647713 [ NCBI ]
CGAP (NCI)Hs.647713
Gene ExpressionS100A7L2 [ NCBI-GEO ]   S100A7L2 [ EBI - ARRAY_EXPRESS ]   S100A7L2 [ SEEK ]   S100A7L2 [ MEM ]
Gene Expression Viewer (FireBrowse)S100A7L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645922
GTEX Portal (Tissue expression)S100A7L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SY68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SY68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SY68
Splice isoforms : SwissVarQ5SY68
PhosPhoSitePlusQ5SY68
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    S-100_dom    S100_Ca-bd_sub   
Domain families : Pfam (Sanger)S_100 (PF01023)   
Domain families : Pfam (NCBI)pfam01023   
Conserved Domain (NCBI)S100A7L2
DMDM Disease mutations645922
Blocks (Seattle)S100A7L2
SuperfamilyQ5SY68
Peptide AtlasQ5SY68
IPIIPI00477977   
Protein Interaction databases
DIP (DOE-UCLA)Q5SY68
IntAct (EBI)Q5SY68
BioGRIDS100A7L2
STRING (EMBL)S100A7L2
ZODIACS100A7L2
Ontologies - Pathways
QuickGOQ5SY68
Ontology : AmiGOcalcium ion binding  transition metal ion binding  
Ontology : EGO-EBIcalcium ion binding  transition metal ion binding  
NDEx NetworkS100A7L2
Atlas of Cancer Signalling NetworkS100A7L2
Wikipedia pathwaysS100A7L2
Orthology - Evolution
OrthoDB645922
Phylogenetic Trees/Animal Genes : TreeFamS100A7L2
HOVERGENQ5SY68
HOGENOMQ5SY68
Homologs : HomoloGeneS100A7L2
Homology/Alignments : Family Browser (UCSC)S100A7L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerS100A7L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)S100A7L2
dbVarS100A7L2
ClinVarS100A7L2
1000_GenomesS100A7L2 
Exome Variant ServerS100A7L2
ExAC (Exome Aggregation Consortium)S100A7L2 (select the gene name)
Genetic variants : HAPMAP645922
Genomic Variants (DGV)S100A7L2 [DGVbeta]
DECIPHERS100A7L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisS100A7L2 
Mutations
ICGC Data PortalS100A7L2 
TCGA Data PortalS100A7L2 
Broad Tumor PortalS100A7L2
OASIS PortalS100A7L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICS100A7L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDS100A7L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch S100A7L2
DgiDB (Drug Gene Interaction Database)S100A7L2
DoCM (Curated mutations)S100A7L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)S100A7L2 (select a term)
intoGenS100A7L2
Cancer3DS100A7L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenS100A7L2
Genetic Testing Registry S100A7L2
NextProtQ5SY68 [Medical]
TSGene645922
GENETestsS100A7L2
Huge Navigator S100A7L2 [HugePedia]
snp3D : Map Gene to Disease645922
BioCentury BCIQS100A7L2
ClinGenS100A7L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645922
Chemical/Pharm GKB GenePA134903327
Clinical trialS100A7L2
Miscellaneous
canSAR (ICR)S100A7L2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineS100A7L2
EVEXS100A7L2
GoPubMedS100A7L2
iHOPS100A7L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:52:05 CEST 2017

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