Atlas of Genetics and Cytogenetics in Oncology and Haematology


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S100G (S100 calcium binding protein G)

Identity

Alias_namesCALB3
calbindin 3
Alias_symbol (synonym)CABP9K
CABP1
Other aliasCABP
HGNC (Hugo) S100G
LocusID (NCBI) 795
Atlas_Id 902
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 16668281 and ends at 16672791 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)S100G   1436
Cards
Entrez_Gene (NCBI)S100G  795  S100 calcium binding protein G
AliasesCABP; CABP1; CABP9K; CALB3
GeneCards (Weizmann)S100G
Ensembl hg19 (Hinxton)ENSG00000169906 [Gene_View]  chrX:16668281-16672791 [Contig_View]  S100G [Vega]
Ensembl hg38 (Hinxton)ENSG00000169906 [Gene_View]  chrX:16668281-16672791 [Contig_View]  S100G [Vega]
ICGC DataPortalENSG00000169906
TCGA cBioPortalS100G
AceView (NCBI)S100G
Genatlas (Paris)S100G
WikiGenes795
SOURCE (Princeton)S100G
Genetics Home Reference (NIH)S100G
Genomic and cartography
GoldenPath hg19 (UCSC)S100G  -     chrX:16668281-16672791 +  Xp22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)S100G  -     Xp22.2   [Description]    (hg38-Dec_2013)
EnsemblS100G - Xp22.2 [CytoView hg19]  S100G - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBIS100G [Mapview hg19]  S100G [Mapview hg38]
OMIM302020   
Gene and transcription
Genbank (Entrez)BC111917 BC112174 L13220 X65869
RefSeq transcript (Entrez)NM_004057
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_013229 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)S100G
Cluster EST : UnigeneHs.639 [ NCBI ]
CGAP (NCI)Hs.639
Alternative Splicing GalleryENSG00000169906
Gene ExpressionS100G [ NCBI-GEO ]   S100G [ EBI - ARRAY_EXPRESS ]   S100G [ SEEK ]   S100G [ MEM ]
Gene Expression Viewer (FireBrowse)S100G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)795
GTEX Portal (Tissue expression)S100G
Protein : pattern, domain, 3D structure
UniProt/SwissProtP29377   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP29377  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP29377
Splice isoforms : SwissVarP29377
PhosPhoSitePlusP29377
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    S100_CABP (PS00303)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    S100/CaBP-9k_CS    S100_Ca-bd_sub    S100G   
Domain families : Pfam (Sanger)EF-hand_1 (PF00036)    S_100 (PF01023)   
Domain families : Pfam (NCBI)pfam00036    pfam01023   
Conserved Domain (NCBI)S100G
DMDM Disease mutations795
Blocks (Seattle)S100G
SuperfamilyP29377
Human Protein AtlasENSG00000169906
Peptide AtlasP29377
HPRD02360
IPIIPI00303002   
Protein Interaction databases
DIP (DOE-UCLA)P29377
IntAct (EBI)P29377
FunCoupENSG00000169906
BioGRIDS100G
STRING (EMBL)S100G
ZODIACS100G
Ontologies - Pathways
QuickGOP29377
Ontology : AmiGOvitamin D binding  calcium ion binding  basolateral plasma membrane  apical plasma membrane  
Ontology : EGO-EBIvitamin D binding  calcium ion binding  basolateral plasma membrane  apical plasma membrane  
Pathways : KEGGMineral absorption   
NDEx NetworkS100G
Atlas of Cancer Signalling NetworkS100G
Wikipedia pathwaysS100G
Orthology - Evolution
OrthoDB795
GeneTree (enSembl)ENSG00000169906
Phylogenetic Trees/Animal Genes : TreeFamS100G
HOVERGENP29377
HOGENOMP29377
Homologs : HomoloGeneS100G
Homology/Alignments : Family Browser (UCSC)S100G
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerS100G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)S100G
dbVarS100G
ClinVarS100G
1000_GenomesS100G 
Exome Variant ServerS100G
ExAC (Exome Aggregation Consortium)S100G (select the gene name)
Genetic variants : HAPMAP795
Genomic Variants (DGV)S100G [DGVbeta]
DECIPHER (Syndromes)X:16668281-16672791  ENSG00000169906
CONAN: Copy Number AnalysisS100G 
Mutations
ICGC Data PortalS100G 
TCGA Data PortalS100G 
Broad Tumor PortalS100G
OASIS PortalS100G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICS100G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDS100G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch S100G
DgiDB (Drug Gene Interaction Database)S100G
DoCM (Curated mutations)S100G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)S100G (select a term)
intoGenS100G
Cancer3DS100G(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM302020   
Orphanet
MedgenS100G
Genetic Testing Registry S100G
NextProtP29377 [Medical]
TSGene795
GENETestsS100G
Huge Navigator S100G [HugePedia]
snp3D : Map Gene to Disease795
BioCentury BCIQS100G
ClinGenS100G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD795
Chemical/Pharm GKB GenePA26028
Clinical trialS100G
Miscellaneous
canSAR (ICR)S100G (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineS100G
EVEXS100G
GoPubMedS100G
iHOPS100G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:26:02 CET 2017

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