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S100Z (S100 calcium binding protein Z)

Identity

Alias_namesS100 calcium binding protein, zeta
Alias_symbol (synonym)Gm625
S100-zeta
Other alias
HGNC (Hugo) S100Z
LocusID (NCBI) 170591
Atlas_Id 72954
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 76850001 and ends at 76921231 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)S100Z   30367
Cards
Entrez_Gene (NCBI)S100Z  170591  S100 calcium binding protein Z
AliasesGm625; S100-zeta
GeneCards (Weizmann)S100Z
Ensembl hg19 (Hinxton)ENSG00000171643 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171643 [Gene_View]  chr5:76850001-76921231 [Contig_View]  S100Z [Vega]
ICGC DataPortalENSG00000171643
TCGA cBioPortalS100Z
AceView (NCBI)S100Z
Genatlas (Paris)S100Z
WikiGenes170591
SOURCE (Princeton)S100Z
Genetics Home Reference (NIH)S100Z
Genomic and cartography
GoldenPath hg38 (UCSC)S100Z  -     chr5:76850001-76921231 +  5q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)S100Z  -     5q13.3   [Description]    (hg19-Feb_2009)
EnsemblS100Z - 5q13.3 [CytoView hg19]  S100Z - 5q13.3 [CytoView hg38]
Mapping of homologs : NCBIS100Z [Mapview hg19]  S100Z [Mapview hg38]
OMIM610103   
Gene and transcription
Genbank (Entrez)AF437876 BC022320 BX281742 CD368348
RefSeq transcript (Entrez)NM_130772
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)S100Z
Cluster EST : UnigeneHs.482563 [ NCBI ]
CGAP (NCI)Hs.482563
Alternative Splicing GalleryENSG00000171643
Gene ExpressionS100Z [ NCBI-GEO ]   S100Z [ EBI - ARRAY_EXPRESS ]   S100Z [ SEEK ]   S100Z [ MEM ]
Gene Expression Viewer (FireBrowse)S100Z [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170591
GTEX Portal (Tissue expression)S100Z
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXG8
Splice isoforms : SwissVarQ8WXG8
PhosPhoSitePlusQ8WXG8
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    S100_CABP (PS00303)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    S100/CaBP-9k_CS    S100_Ca-bd_sub    S100Z   
Domain families : Pfam (Sanger)S_100 (PF01023)   
Domain families : Pfam (NCBI)pfam01023   
Domain families : Smart (EMBL)EFh (SM00054)  S_100 (SM01394)  
Conserved Domain (NCBI)S100Z
DMDM Disease mutations170591
Blocks (Seattle)S100Z
PDB (SRS)5HYD   
PDB (PDBSum)5HYD   
PDB (IMB)5HYD   
PDB (RSDB)5HYD   
Structural Biology KnowledgeBase5HYD   
SCOP (Structural Classification of Proteins)5HYD   
CATH (Classification of proteins structures)5HYD   
SuperfamilyQ8WXG8
Human Protein AtlasENSG00000171643
Peptide AtlasQ8WXG8
HPRD15291
IPIIPI00216284   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXG8
IntAct (EBI)Q8WXG8
FunCoupENSG00000171643
BioGRIDS100Z
STRING (EMBL)S100Z
ZODIACS100Z
Ontologies - Pathways
QuickGOQ8WXG8
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
NDEx NetworkS100Z
Atlas of Cancer Signalling NetworkS100Z
Wikipedia pathwaysS100Z
Orthology - Evolution
OrthoDB170591
GeneTree (enSembl)ENSG00000171643
Phylogenetic Trees/Animal Genes : TreeFamS100Z
HOVERGENQ8WXG8
HOGENOMQ8WXG8
Homologs : HomoloGeneS100Z
Homology/Alignments : Family Browser (UCSC)S100Z
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerS100Z [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)S100Z
dbVarS100Z
ClinVarS100Z
1000_GenomesS100Z 
Exome Variant ServerS100Z
ExAC (Exome Aggregation Consortium)S100Z (select the gene name)
Genetic variants : HAPMAP170591
Genomic Variants (DGV)S100Z [DGVbeta]
DECIPHERS100Z [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisS100Z 
Mutations
ICGC Data PortalS100Z 
TCGA Data PortalS100Z 
Broad Tumor PortalS100Z
OASIS PortalS100Z [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICS100Z  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDS100Z
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch S100Z
DgiDB (Drug Gene Interaction Database)S100Z
DoCM (Curated mutations)S100Z (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)S100Z (select a term)
intoGenS100Z
Cancer3DS100Z(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610103   
Orphanet
MedgenS100Z
Genetic Testing Registry S100Z
NextProtQ8WXG8 [Medical]
TSGene170591
GENETestsS100Z
Target ValidationS100Z
Huge Navigator S100Z [HugePedia]
snp3D : Map Gene to Disease170591
BioCentury BCIQS100Z
ClinGenS100Z
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170591
Chemical/Pharm GKB GenePA134902118
Clinical trialS100Z
Miscellaneous
canSAR (ICR)S100Z (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineS100Z
EVEXS100Z
GoPubMedS100Z
iHOPS100Z
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:46 CEST 2017

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