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SAA2 (serum amyloid A2)

Identity

Other alias-
HGNC (Hugo) SAA2
LocusID (NCBI) 6289
Atlas_Id 46221
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 18238233 and ends at 18248674 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAA2   10514
Cards
Entrez_Gene (NCBI)SAA2  6289  serum amyloid A2
Aliases
GeneCards (Weizmann)SAA2
Ensembl hg19 (Hinxton)ENSG00000134339 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134339 [Gene_View]  chr11:18238233-18248674 [Contig_View]  SAA2 [Vega]
ICGC DataPortalENSG00000134339
TCGA cBioPortalSAA2
AceView (NCBI)SAA2
Genatlas (Paris)SAA2
WikiGenes6289
SOURCE (Princeton)SAA2
Genetics Home Reference (NIH)SAA2
Genomic and cartography
GoldenPath hg38 (UCSC)SAA2  -     chr11:18238233-18248674 -  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAA2  -     11p15.1   [Description]    (hg19-Feb_2009)
EnsemblSAA2 - 11p15.1 [CytoView hg19]  SAA2 - 11p15.1 [CytoView hg38]
Mapping of homologs : NCBISAA2 [Mapview hg19]  SAA2 [Mapview hg38]
OMIM104751   
Gene and transcription
Genbank (Entrez)AK307163 BC020795 BC058008 BU607521 CB241029
RefSeq transcript (Entrez)NM_001127380 NM_030754
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAA2
Cluster EST : UnigeneHs.734161 [ NCBI ]
CGAP (NCI)Hs.734161
Alternative Splicing GalleryENSG00000134339
Gene ExpressionSAA2 [ NCBI-GEO ]   SAA2 [ EBI - ARRAY_EXPRESS ]   SAA2 [ SEEK ]   SAA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SAA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6289
GTEX Portal (Tissue expression)SAA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DJI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DJI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DJI9
Splice isoforms : SwissVarP0DJI9
PhosPhoSitePlusP0DJI9
Domaine pattern : Prosite (Expaxy)SAA (PS00992)   
Domains : Interpro (EBI)Serum_amyloid_A   
Domain families : Pfam (Sanger)SAA (PF00277)   
Domain families : Pfam (NCBI)pfam00277   
Domain families : Smart (EMBL)SAA (SM00197)  
Conserved Domain (NCBI)SAA2
DMDM Disease mutations6289
Blocks (Seattle)SAA2
SuperfamilyP0DJI9
Human Protein AtlasENSG00000134339
Peptide AtlasP0DJI9
HPRD00098
Protein Interaction databases
DIP (DOE-UCLA)P0DJI9
IntAct (EBI)P0DJI9
FunCoupENSG00000134339
BioGRIDSAA2
STRING (EMBL)SAA2
ZODIACSAA2
Ontologies - Pathways
QuickGOP0DJI9
Ontology : AmiGOextracellular space  acute-phase response  high-density lipoprotein particle  chemoattractant activity  positive chemotaxis  cell chemotaxis  extracellular exosome  
Ontology : EGO-EBIextracellular space  acute-phase response  high-density lipoprotein particle  chemoattractant activity  positive chemotaxis  cell chemotaxis  extracellular exosome  
NDEx NetworkSAA2
Atlas of Cancer Signalling NetworkSAA2
Wikipedia pathwaysSAA2
Orthology - Evolution
OrthoDB6289
GeneTree (enSembl)ENSG00000134339
Phylogenetic Trees/Animal Genes : TreeFamSAA2
HOVERGENP0DJI9
HOGENOMP0DJI9
Homologs : HomoloGeneSAA2
Homology/Alignments : Family Browser (UCSC)SAA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAA2
dbVarSAA2
ClinVarSAA2
1000_GenomesSAA2 
Exome Variant ServerSAA2
ExAC (Exome Aggregation Consortium)SAA2 (select the gene name)
Genetic variants : HAPMAP6289
Genomic Variants (DGV)SAA2 [DGVbeta]
DECIPHERSAA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAA2 
Mutations
ICGC Data PortalSAA2 
TCGA Data PortalSAA2 
Broad Tumor PortalSAA2
OASIS PortalSAA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAA2
DgiDB (Drug Gene Interaction Database)SAA2
DoCM (Curated mutations)SAA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAA2 (select a term)
intoGenSAA2
Cancer3DSAA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM104751   
Orphanet
MedgenSAA2
Genetic Testing Registry SAA2
NextProtP0DJI9 [Medical]
TSGene6289
GENETestsSAA2
Target ValidationSAA2
Huge Navigator SAA2 [HugePedia]
snp3D : Map Gene to Disease6289
BioCentury BCIQSAA2
ClinGenSAA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6289
Chemical/Pharm GKB GenePA34922
Clinical trialSAA2
Miscellaneous
canSAR (ICR)SAA2 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAA2
EVEXSAA2
GoPubMedSAA2
iHOPSAA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:06:30 CEST 2017

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