Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SAA2 (serum amyloid A2)

Identity

Alias (NCBI)SAA
SAA1
HGNC (Hugo) SAA2
LocusID (NCBI) 6289
Atlas_Id 46221
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 18245240 and ends at 18248668 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SAA2   10514
Cards
Entrez_Gene (NCBI)SAA2    serum amyloid A2
AliasesSAA; SAA1
GeneCards (Weizmann)SAA2
Ensembl hg19 (Hinxton)ENSG00000134339 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134339 [Gene_View]  ENSG00000134339 [Sequence]  chr11:18245240-18248668 [Contig_View]  SAA2 [Vega]
ICGC DataPortalENSG00000134339
TCGA cBioPortalSAA2
AceView (NCBI)SAA2
Genatlas (Paris)SAA2
SOURCE (Princeton)SAA2
Genetics Home Reference (NIH)SAA2
Genomic and cartography
GoldenPath hg38 (UCSC)SAA2  -     chr11:18245240-18248668 -  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAA2  -     11p15.1   [Description]    (hg19-Feb_2009)
GoldenPathSAA2 - 11p15.1 [CytoView hg19]  SAA2 - 11p15.1 [CytoView hg38]
ImmunoBaseENSG00000134339
genome Data Viewer NCBISAA2 [Mapview hg19]  
OMIM104751   
Gene and transcription
Genbank (Entrez)AK307163 BC020795 BC058008 BU607521 CB241029
RefSeq transcript (Entrez)NM_001127380 NM_030754
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAA2
Alternative Splicing GalleryENSG00000134339
Gene ExpressionSAA2 [ NCBI-GEO ]   SAA2 [ EBI - ARRAY_EXPRESS ]   SAA2 [ SEEK ]   SAA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SAA2 [ Firebrowse - Broad ]
GenevisibleExpression of SAA2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6289
GTEX Portal (Tissue expression)SAA2
Human Protein AtlasENSG00000134339-SAA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DJI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DJI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DJI9
Splice isoforms : SwissVarP0DJI9
PhosPhoSitePlusP0DJI9
Domaine pattern : Prosite (Expaxy)SAA (PS00992)   
Domains : Interpro (EBI)Serum_amyloid_A   
Domain families : Pfam (Sanger)SAA (PF00277)   
Domain families : Pfam (NCBI)pfam00277   
Domain families : Smart (EMBL)SAA (SM00197)  
Conserved Domain (NCBI)SAA2
Blocks (Seattle)SAA2
SuperfamilyP0DJI9
Human Protein Atlas [tissue]ENSG00000134339-SAA2 [tissue]
Peptide AtlasP0DJI9
HPRD00098
Protein Interaction databases
DIP (DOE-UCLA)P0DJI9
IntAct (EBI)P0DJI9
BioGRIDSAA2
STRING (EMBL)SAA2
ZODIACSAA2
Ontologies - Pathways
QuickGOP0DJI9
Ontology : AmiGOacute-phase response  high-density lipoprotein particle  positive chemotaxis  extracellular exosome  
Ontology : EGO-EBIacute-phase response  high-density lipoprotein particle  positive chemotaxis  extracellular exosome  
NDEx NetworkSAA2
Atlas of Cancer Signalling NetworkSAA2
Wikipedia pathwaysSAA2
Orthology - Evolution
OrthoDB6289
GeneTree (enSembl)ENSG00000134339
Phylogenetic Trees/Animal Genes : TreeFamSAA2
HOGENOMP0DJI9
Homologs : HomoloGeneSAA2
Homology/Alignments : Family Browser (UCSC)SAA2
Gene fusions - Rearrangements
Fusion : QuiverSAA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAA2 [hg38]
dbVarSAA2
ClinVarSAA2
MonarchSAA2
1000_GenomesSAA2 
Exome Variant ServerSAA2
GNOMAD BrowserENSG00000134339
Varsome BrowserSAA2
Genomic Variants (DGV)SAA2 [DGVbeta]
DECIPHERSAA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAA2 
Mutations
ICGC Data PortalSAA2 
TCGA Data PortalSAA2 
Broad Tumor PortalSAA2
OASIS PortalSAA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAA2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSAA2
Mutations and Diseases : HGMDSAA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAA2
DgiDB (Drug Gene Interaction Database)SAA2
DoCM (Curated mutations)SAA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAA2 (select a term)
intoGenSAA2
Cancer3DSAA2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM104751   
Orphanet
DisGeNETSAA2
MedgenSAA2
Genetic Testing Registry SAA2
NextProtP0DJI9 [Medical]
GENETestsSAA2
Target ValidationSAA2
Huge Navigator SAA2 [HugePedia]
ClinGenSAA2
Clinical trials, drugs, therapy
MyCancerGenomeSAA2
Protein Interactions : CTD
Pharm GKB GenePA34922
PharosP0DJI9
Clinical trialSAA2
Miscellaneous
canSAR (ICR)SAA2 (select the gene name)
HarmonizomeSAA2
DataMed IndexSAA2
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSAA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:36:05 CET 2021

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