Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SAA3P (serum amyloid A3 pseudogene)

Identity

Alias_namesSAA3
Other alias
HGNC (Hugo) SAA3P
LocusID (NCBI) 6290
Atlas_Id 55178
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 18134019 and ends at 18137679 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SAA3P (11p15.1) / GYS2 (12p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAA3P   10515
Cards
Entrez_Gene (NCBI)SAA3P  6290  serum amyloid A3 pseudogene
AliasesSAA3
GeneCards (Weizmann)SAA3P
Ensembl hg19 (Hinxton)ENSG00000166787 [Gene_View]  chr11:18134019-18137679 [Contig_View]  SAA3P [Vega]
Ensembl hg38 (Hinxton)ENSG00000166787 [Gene_View]  chr11:18134019-18137679 [Contig_View]  SAA3P [Vega]
ICGC DataPortalENSG00000166787
TCGA cBioPortalSAA3P
AceView (NCBI)SAA3P
Genatlas (Paris)SAA3P
WikiGenes6290
SOURCE (Princeton)SAA3P
Genetics Home Reference (NIH)SAA3P
Genomic and cartography
GoldenPath hg19 (UCSC)SAA3P  -     chr11:18134019-18137679 -  11p15.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SAA3P  -     11p15.1   [Description]    (hg38-Dec_2013)
EnsemblSAA3P - 11p15.1 [CytoView hg19]  SAA3P - 11p15.1 [CytoView hg38]
Mapping of homologs : NCBISAA3P [Mapview hg19]  SAA3P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY209188
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_002634 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)SAA3P
Cluster EST : UnigeneHs.454496 [ NCBI ]
CGAP (NCI)Hs.454496
Alternative Splicing GalleryENSG00000166787
Gene ExpressionSAA3P [ NCBI-GEO ]   SAA3P [ EBI - ARRAY_EXPRESS ]   SAA3P [ SEEK ]   SAA3P [ MEM ]
Gene Expression Viewer (FireBrowse)SAA3P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6290
GTEX Portal (Tissue expression)SAA3P
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SAA3P
DMDM Disease mutations6290
Blocks (Seattle)SAA3P
Human Protein AtlasENSG00000166787
IPIIPI00027191   
Protein Interaction databases
FunCoupENSG00000166787
BioGRIDSAA3P
STRING (EMBL)SAA3P
ZODIACSAA3P
Ontologies - Pathways
Huge Navigator SAA3P [HugePedia]
snp3D : Map Gene to Disease6290
BioCentury BCIQSAA3P
ClinGenSAA3P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6290
Chemical/Pharm GKB GenePA34923
Clinical trialSAA3P
Miscellaneous
canSAR (ICR)SAA3P (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAA3P
EVEXSAA3P
GoPubMedSAA3P
iHOPSAA3P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:26:04 CET 2017

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