Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SAA4 (serum amyloid A4, constitutive)

Identity

Alias_symbol (synonym)C-SAA
CSAA
Other alias
HGNC (Hugo) SAA4
LocusID (NCBI) 6291
Atlas_Id 53688
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 18231355 and ends at 18236837 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAA4   10516
Cards
Entrez_Gene (NCBI)SAA4  6291  serum amyloid A4, constitutive
AliasesC-SAA; CSAA
GeneCards (Weizmann)SAA4
Ensembl hg19 (Hinxton)ENSG00000148965 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148965 [Gene_View]  chr11:18231355-18236837 [Contig_View]  SAA4 [Vega]
ICGC DataPortalENSG00000148965
TCGA cBioPortalSAA4
AceView (NCBI)SAA4
Genatlas (Paris)SAA4
WikiGenes6291
SOURCE (Princeton)SAA4
Genetics Home Reference (NIH)SAA4
Genomic and cartography
GoldenPath hg38 (UCSC)SAA4  -     chr11:18231355-18236837 -  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAA4  -     11p15.1   [Description]    (hg19-Feb_2009)
EnsemblSAA4 - 11p15.1 [CytoView hg19]  SAA4 - 11p15.1 [CytoView hg38]
Mapping of homologs : NCBISAA4 [Mapview hg19]  SAA4 [Mapview hg38]
OMIM104752   
Gene and transcription
Genbank (Entrez)AK312182 AV699045 BC007026 BG569210 BU685219
RefSeq transcript (Entrez)NM_006512
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAA4
Cluster EST : UnigeneHs.1955 [ NCBI ]
CGAP (NCI)Hs.1955
Alternative Splicing GalleryENSG00000148965
Gene ExpressionSAA4 [ NCBI-GEO ]   SAA4 [ EBI - ARRAY_EXPRESS ]   SAA4 [ SEEK ]   SAA4 [ MEM ]
Gene Expression Viewer (FireBrowse)SAA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6291
GTEX Portal (Tissue expression)SAA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35542   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP35542  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP35542
Splice isoforms : SwissVarP35542
PhosPhoSitePlusP35542
Domaine pattern : Prosite (Expaxy)SAA (PS00992)   
Domains : Interpro (EBI)Serum_amyloid_A   
Domain families : Pfam (Sanger)SAA (PF00277)   
Domain families : Pfam (NCBI)pfam00277   
Domain families : Smart (EMBL)SAA (SM00197)  
Conserved Domain (NCBI)SAA4
DMDM Disease mutations6291
Blocks (Seattle)SAA4
SuperfamilyP35542
Human Protein AtlasENSG00000148965
Peptide AtlasP35542
HPRD00099
IPIIPI00019399   
Protein Interaction databases
DIP (DOE-UCLA)P35542
IntAct (EBI)P35542
FunCoupENSG00000148965
BioGRIDSAA4
STRING (EMBL)SAA4
ZODIACSAA4
Ontologies - Pathways
QuickGOP35542
Ontology : AmiGOextracellular region  extracellular space  acute-phase response  high-density lipoprotein particle  chemoattractant activity  positive chemotaxis  cell chemotaxis  extracellular exosome  
Ontology : EGO-EBIextracellular region  extracellular space  acute-phase response  high-density lipoprotein particle  chemoattractant activity  positive chemotaxis  cell chemotaxis  extracellular exosome  
NDEx NetworkSAA4
Atlas of Cancer Signalling NetworkSAA4
Wikipedia pathwaysSAA4
Orthology - Evolution
OrthoDB6291
GeneTree (enSembl)ENSG00000148965
Phylogenetic Trees/Animal Genes : TreeFamSAA4
HOVERGENP35542
HOGENOMP35542
Homologs : HomoloGeneSAA4
Homology/Alignments : Family Browser (UCSC)SAA4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAA4
dbVarSAA4
ClinVarSAA4
1000_GenomesSAA4 
Exome Variant ServerSAA4
ExAC (Exome Aggregation Consortium)SAA4 (select the gene name)
Genetic variants : HAPMAP6291
Genomic Variants (DGV)SAA4 [DGVbeta]
DECIPHERSAA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAA4 
Mutations
ICGC Data PortalSAA4 
TCGA Data PortalSAA4 
Broad Tumor PortalSAA4
OASIS PortalSAA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAA4
DgiDB (Drug Gene Interaction Database)SAA4
DoCM (Curated mutations)SAA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAA4 (select a term)
intoGenSAA4
Cancer3DSAA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM104752   
Orphanet
MedgenSAA4
Genetic Testing Registry SAA4
NextProtP35542 [Medical]
TSGene6291
GENETestsSAA4
Target ValidationSAA4
Huge Navigator SAA4 [HugePedia]
snp3D : Map Gene to Disease6291
BioCentury BCIQSAA4
ClinGenSAA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6291
Chemical/Pharm GKB GenePA34924
Clinical trialSAA4
Miscellaneous
canSAR (ICR)SAA4 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAA4
EVEXSAA4
GoPubMedSAA4
iHOPSAA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:29:51 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.