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SAAL1 (serum amyloid A like 1)

Identity

Alias_symbol (synonym)FLJ41463
Other aliasSPACIA1
HGNC (Hugo) SAAL1
LocusID (NCBI) 113174
Atlas_Id 56101
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 18080343 and ends at 18106091 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SAAL1 (11p15.1) / ENO1 (1p36.23)SGOL2 (2q33.1) / SAAL1 (11p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAAL1   25158
Cards
Entrez_Gene (NCBI)SAAL1  113174  serum amyloid A like 1
AliasesSPACIA1
GeneCards (Weizmann)SAAL1
Ensembl hg19 (Hinxton)ENSG00000166788 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166788 [Gene_View]  chr11:18080343-18106091 [Contig_View]  SAAL1 [Vega]
ICGC DataPortalENSG00000166788
TCGA cBioPortalSAAL1
AceView (NCBI)SAAL1
Genatlas (Paris)SAAL1
WikiGenes113174
SOURCE (Princeton)SAAL1
Genetics Home Reference (NIH)SAAL1
Genomic and cartography
GoldenPath hg38 (UCSC)SAAL1  -     chr11:18080343-18106091 -  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAAL1  -     11p15.1   [Description]    (hg19-Feb_2009)
EnsemblSAAL1 - 11p15.1 [CytoView hg19]  SAAL1 - 11p15.1 [CytoView hg38]
Mapping of homologs : NCBISAAL1 [Mapview hg19]  SAAL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB489136 AK123457 BC012010 BU150462 DR155913
RefSeq transcript (Entrez)NM_138421
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAAL1
Cluster EST : UnigeneHs.591998 [ NCBI ]
CGAP (NCI)Hs.591998
Alternative Splicing GalleryENSG00000166788
Gene ExpressionSAAL1 [ NCBI-GEO ]   SAAL1 [ EBI - ARRAY_EXPRESS ]   SAAL1 [ SEEK ]   SAAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)SAAL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113174
GTEX Portal (Tissue expression)SAAL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96ER3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96ER3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96ER3
Splice isoforms : SwissVarQ96ER3
PhosPhoSitePlusQ96ER3
Domains : Interpro (EBI)ARM-like    ARM-type_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SAAL1
DMDM Disease mutations113174
Blocks (Seattle)SAAL1
SuperfamilyQ96ER3
Human Protein AtlasENSG00000166788
Peptide AtlasQ96ER3
HPRD13999
IPIIPI00304935   IPI00982694   IPI00979413   IPI00977265   IPI00980581   IPI00979197   IPI00980393   IPI00981255   
Protein Interaction databases
DIP (DOE-UCLA)Q96ER3
IntAct (EBI)Q96ER3
FunCoupENSG00000166788
BioGRIDSAAL1
STRING (EMBL)SAAL1
ZODIACSAAL1
Ontologies - Pathways
QuickGOQ96ER3
Ontology : AmiGOextracellular space  
Ontology : EGO-EBIextracellular space  
NDEx NetworkSAAL1
Atlas of Cancer Signalling NetworkSAAL1
Wikipedia pathwaysSAAL1
Orthology - Evolution
OrthoDB113174
GeneTree (enSembl)ENSG00000166788
Phylogenetic Trees/Animal Genes : TreeFamSAAL1
HOVERGENQ96ER3
HOGENOMQ96ER3
Homologs : HomoloGeneSAAL1
Homology/Alignments : Family Browser (UCSC)SAAL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAAL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAAL1
dbVarSAAL1
ClinVarSAAL1
1000_GenomesSAAL1 
Exome Variant ServerSAAL1
ExAC (Exome Aggregation Consortium)SAAL1 (select the gene name)
Genetic variants : HAPMAP113174
Genomic Variants (DGV)SAAL1 [DGVbeta]
DECIPHERSAAL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAAL1 
Mutations
ICGC Data PortalSAAL1 
TCGA Data PortalSAAL1 
Broad Tumor PortalSAAL1
OASIS PortalSAAL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAAL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAAL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAAL1
DgiDB (Drug Gene Interaction Database)SAAL1
DoCM (Curated mutations)SAAL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAAL1 (select a term)
intoGenSAAL1
Cancer3DSAAL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSAAL1
Genetic Testing Registry SAAL1
NextProtQ96ER3 [Medical]
TSGene113174
GENETestsSAAL1
Huge Navigator SAAL1 [HugePedia]
snp3D : Map Gene to Disease113174
BioCentury BCIQSAAL1
ClinGenSAAL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113174
Chemical/Pharm GKB GenePA142670959
Clinical trialSAAL1
Miscellaneous
canSAR (ICR)SAAL1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAAL1
EVEXSAAL1
GoPubMedSAAL1
iHOPSAAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:36:00 CEST 2017

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