Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SAC3D1 (SAC3 domain containing 1)

Identity

Alias_symbol (synonym)HSU79266
SHD1
Other alias
HGNC (Hugo) SAC3D1
LocusID (NCBI) 29901
Atlas_Id 72958
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65040904 and ends at 65044828 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SAC3D1 (11q13.1) / SNX15 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAC3D1   30179
Cards
Entrez_Gene (NCBI)SAC3D1  29901  SAC3 domain containing 1
AliasesHSU79266; SHD1
GeneCards (Weizmann)SAC3D1
Ensembl hg19 (Hinxton)ENSG00000168061 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168061 [Gene_View]  chr11:65040904-65044828 [Contig_View]  SAC3D1 [Vega]
ICGC DataPortalENSG00000168061
TCGA cBioPortalSAC3D1
AceView (NCBI)SAC3D1
Genatlas (Paris)SAC3D1
WikiGenes29901
SOURCE (Princeton)SAC3D1
Genetics Home Reference (NIH)SAC3D1
Genomic and cartography
GoldenPath hg38 (UCSC)SAC3D1  -     chr11:65040904-65044828 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAC3D1  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblSAC3D1 - 11q13.1 [CytoView hg19]  SAC3D1 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBISAC3D1 [Mapview hg19]  SAC3D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AU119957 BC007448 BP253859 U79266
RefSeq transcript (Entrez)NM_013299
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAC3D1
Cluster EST : UnigeneHs.23642 [ NCBI ]
CGAP (NCI)Hs.23642
Alternative Splicing GalleryENSG00000168061
Gene ExpressionSAC3D1 [ NCBI-GEO ]   SAC3D1 [ EBI - ARRAY_EXPRESS ]   SAC3D1 [ SEEK ]   SAC3D1 [ MEM ]
Gene Expression Viewer (FireBrowse)SAC3D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29901
GTEX Portal (Tissue expression)SAC3D1
Human Protein AtlasENSG00000168061-SAC3D1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKF1
Splice isoforms : SwissVarA6NKF1
PhosPhoSitePlusA6NKF1
Domains : Interpro (EBI)SAC3/GANP/THP3   
Domain families : Pfam (Sanger)SAC3_GANP (PF03399)   
Domain families : Pfam (NCBI)pfam03399   
Conserved Domain (NCBI)SAC3D1
DMDM Disease mutations29901
Blocks (Seattle)SAC3D1
SuperfamilyA6NKF1
Human Protein Atlas [tissue]ENSG00000168061-SAC3D1 [tissue]
Peptide AtlasA6NKF1
HPRD11558
IPIIPI00854724   IPI00923502   IPI00871355   
Protein Interaction databases
DIP (DOE-UCLA)A6NKF1
IntAct (EBI)A6NKF1
FunCoupENSG00000168061
BioGRIDSAC3D1
STRING (EMBL)SAC3D1
ZODIACSAC3D1
Ontologies - Pathways
QuickGOA6NKF1
Ontology : AmiGOprotein binding  cytoplasm  microtubule organizing center  spindle  cell cycle  cell division  
Ontology : EGO-EBIprotein binding  cytoplasm  microtubule organizing center  spindle  cell cycle  cell division  
NDEx NetworkSAC3D1
Atlas of Cancer Signalling NetworkSAC3D1
Wikipedia pathwaysSAC3D1
Orthology - Evolution
OrthoDB29901
GeneTree (enSembl)ENSG00000168061
Phylogenetic Trees/Animal Genes : TreeFamSAC3D1
HOVERGENA6NKF1
HOGENOMA6NKF1
Homologs : HomoloGeneSAC3D1
Homology/Alignments : Family Browser (UCSC)SAC3D1
Gene fusions - Rearrangements
Tumor Fusion PortalSAC3D1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAC3D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAC3D1
dbVarSAC3D1
ClinVarSAC3D1
1000_GenomesSAC3D1 
Exome Variant ServerSAC3D1
ExAC (Exome Aggregation Consortium)ENSG00000168061
GNOMAD BrowserENSG00000168061
Genetic variants : HAPMAP29901
Genomic Variants (DGV)SAC3D1 [DGVbeta]
DECIPHERSAC3D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAC3D1 
Mutations
ICGC Data PortalSAC3D1 
TCGA Data PortalSAC3D1 
Broad Tumor PortalSAC3D1
OASIS PortalSAC3D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAC3D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAC3D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAC3D1
DgiDB (Drug Gene Interaction Database)SAC3D1
DoCM (Curated mutations)SAC3D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAC3D1 (select a term)
intoGenSAC3D1
Cancer3DSAC3D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSAC3D1
MedgenSAC3D1
Genetic Testing Registry SAC3D1
NextProtA6NKF1 [Medical]
TSGene29901
GENETestsSAC3D1
Target ValidationSAC3D1
Huge Navigator SAC3D1 [HugePedia]
snp3D : Map Gene to Disease29901
BioCentury BCIQSAC3D1
ClinGenSAC3D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29901
Chemical/Pharm GKB GenePA142670960
Clinical trialSAC3D1
Miscellaneous
canSAR (ICR)SAC3D1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAC3D1
EVEXSAC3D1
GoPubMedSAC3D1
iHOPSAC3D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:25:08 CET 2017

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