Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SACS-AS1 (SACS antisense RNA 1)

Identity

Alias_namesSACS antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SACS-AS1
LocusID (NCBI) 100506680
Atlas_Id 72959
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 23418971 and ends at 23428869 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SACS-AS1   39835
Cards
Entrez_Gene (NCBI)SACS-AS1  100506680  SACS antisense RNA 1
Aliases
GeneCards (Weizmann)SACS-AS1
Ensembl hg19 (Hinxton)ENSG00000229558 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229558 [Gene_View]  ENSG00000229558 [Sequence]  chr13:23418971-23428869 [Contig_View]  SACS-AS1 [Vega]
ICGC DataPortalENSG00000229558
TCGA cBioPortalSACS-AS1
AceView (NCBI)SACS-AS1
Genatlas (Paris)SACS-AS1
WikiGenes100506680
SOURCE (Princeton)SACS-AS1
Genetics Home Reference (NIH)SACS-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SACS-AS1  -     chr13:23418971-23428869 +  13q12.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SACS-AS1  -     13q12.12   [Description]    (hg19-Feb_2009)
EnsemblSACS-AS1 - 13q12.12 [CytoView hg19]  SACS-AS1 - 13q12.12 [CytoView hg38]
Mapping of homologs : NCBISACS-AS1 [Mapview hg19]  SACS-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057396 AW196964 DB022332 DB459589 DB525041
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SACS-AS1
Cluster EST : UnigeneHs.253280 [ NCBI ]
CGAP (NCI)Hs.253280
Alternative Splicing GalleryENSG00000229558
Gene ExpressionSACS-AS1 [ NCBI-GEO ]   SACS-AS1 [ EBI - ARRAY_EXPRESS ]   SACS-AS1 [ SEEK ]   SACS-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SACS-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506680
GTEX Portal (Tissue expression)SACS-AS1
Human Protein AtlasENSG00000229558-SACS-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SACS-AS1
DMDM Disease mutations100506680
Blocks (Seattle)SACS-AS1
Human Protein Atlas [tissue]ENSG00000229558-SACS-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000229558
BioGRIDSACS-AS1
STRING (EMBL)SACS-AS1
ZODIACSACS-AS1
Ontologies - Pathways
Huge Navigator SACS-AS1 [HugePedia]
snp3D : Map Gene to Disease100506680
BioCentury BCIQSACS-AS1
ClinGenSACS-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506680
Clinical trialSACS-AS1
Miscellaneous
canSAR (ICR)SACS-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSACS-AS1
EVEXSACS-AS1
GoPubMedSACS-AS1
iHOPSACS-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:27:59 CEST 2018
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