Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SAG (S-antigen; retina and pineal gland (arrestin))

Identity

Other namesRP47
S-AG
HGNC (Hugo) SAG
LocusID (NCBI) 6295
Location 2q37.1
Location_base_pair Starts at 234216309 and ends at 234255701 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SAG   10521
Cards
Entrez_Gene (NCBI)SAG  6295  S-antigen; retina and pineal gland (arrestin)
GeneCards (Weizmann)SAG
Ensembl (Hinxton)ENSG00000130561 [Gene_View]  chr2:234216309-234255701 [Contig_View]  SAG [Vega]
ICGC DataPortalENSG00000130561
cBioPortalSAG
AceView (NCBI)SAG
Genatlas (Paris)SAG
WikiGenes6295
SOURCE (Princeton)NM_000541
Genomic and cartography
GoldenPath (UCSC)SAG  -  2q37.1   chr2:234216309-234255701 +  2q37.1   [Description]    (hg19-Feb_2009)
EnsemblSAG - 2q37.1 [CytoView]
Mapping of homologs : NCBISAG [Mapview]
OMIM181031   258100   613758   
Gene and transcription
Genbank (Entrez)AA317634 AK302211 BC144203 BC156656 BQ636469
RefSeq transcript (Entrez)NM_000541
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NG_009116 NT_005403 NW_001838868 NW_004929306
Consensus coding sequences : CCDS (NCBI)SAG
Cluster EST : UnigeneHs.32721 [ NCBI ]
CGAP (NCI)Hs.32721
Alternative Splicing : Fast-db (Paris)GSHG0017291
Alternative Splicing GalleryENSG00000130561
Gene ExpressionSAG [ NCBI-GEO ]     SAG [ SEEK ]   SAG [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10523 (Uniprot)
NextProtP10523  [Medical]
With graphics : InterProP10523
Splice isoforms : SwissVarP10523 (Swissvar)
Domaine pattern : Prosite (Expaxy)ARRESTINS (PS00295)   
Domains : Interpro (EBI)Arrestin [organisation]   Arrestin-like_N [organisation]   Arrestin_C [organisation]   Arrestin_C-like [organisation]   Arrestin_CS [organisation]   Arrestin_N [organisation]   Ig_E-set [organisation]  
Related proteins : CluSTrP10523
Domain families : Pfam (Sanger)Arrestin_C (PF02752)    Arrestin_N (PF00339)   
Domain families : Pfam (NCBI)pfam02752    pfam00339   
Domain families : Smart (EMBL)Arrestin_C (SM01017)  
DMDM Disease mutations6295
Blocks (Seattle)P10523
Human Protein AtlasENSG00000130561 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP10523
HPRD01625
IPIIPI00021353   IPI01010183   IPI00425942   IPI00385032   IPI01009239   IPI00916997   IPI00917616   IPI00916047   
Protein Interaction databases
DIP (DOE-UCLA)P10523
IntAct (EBI)P10523
FunCoupENSG00000130561
BioGRIDSAG
InParanoidP10523
Interologous Interaction database P10523
IntegromeDBSAG
STRING (EMBL)SAG
Ontologies - Pathways
Ontology : AmiGOopsin binding  protein phosphatase inhibitor activity  cytosol  cell surface receptor signaling pathway  visual perception  phototransduction, visible light  rhodopsin mediated signaling pathway  regulation of rhodopsin mediated signaling pathway  negative regulation of catalytic activity  phosphoprotein binding  
Ontology : EGO-EBIopsin binding  protein phosphatase inhibitor activity  cytosol  cell surface receptor signaling pathway  visual perception  phototransduction, visible light  rhodopsin mediated signaling pathway  regulation of rhodopsin mediated signaling pathway  negative regulation of catalytic activity  phosphoprotein binding  
Pathways : BIOCARTAVisual Signal Transduction [Genes]   
Protein Interaction DatabaseSAG
Wikipedia pathwaysSAG
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SAG
snp3D : Map Gene to Disease6295
SNP (GeneSNP Utah)SAG
SNP : HGBaseSAG
Genetic variants : HAPMAPSAG
Exome VariantSAG
1000_GenomesSAG 
ICGC programENSG00000130561 
Somatic Mutations in Cancer : COSMICSAG 
CONAN: Copy Number AnalysisSAG 
Mutations and Diseases : HGMDSAG
Mutations and Diseases : intOGenSAG
Genomic VariantsSAG  SAG [DGVbeta]
dbVarSAG
ClinVarSAG
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM181031    258100    613758   
MedgenSAG
GENETestsSAG
Disease Genetic AssociationSAG
Huge Navigator SAG [HugePedia]  SAG [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSAG
Homology/Alignments : Family Browser (UCSC)SAG
Phylogenetic Trees/Animal Genes : TreeFamSAG
Chemical/Protein Interactions : CTD6295
Chemical/Pharm GKB GenePA34929
Clinical trialSAG
Cancer Resource (Charite)ENSG00000130561
Other databases
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
CoreMineSAG
iHOPSAG
OncoSearchSAG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 17:03:45 CEST 2014

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