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SAGE1 (sarcoma antigen 1)

Identity

Alias_symbol (synonym)SAGE
CT14
Other alias
HGNC (Hugo) SAGE1
LocusID (NCBI) 55511
Atlas_Id 42198
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135893634 and ends at 135913061 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAGE1   30369
Cards
Entrez_Gene (NCBI)SAGE1  55511  sarcoma antigen 1
AliasesCT14; SAGE
GeneCards (Weizmann)SAGE1
Ensembl hg19 (Hinxton)ENSG00000181433 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181433 [Gene_View]  ENSG00000181433 [Sequence]  chrX:135893634-135913061 [Contig_View]  SAGE1 [Vega]
ICGC DataPortalENSG00000181433
TCGA cBioPortalSAGE1
AceView (NCBI)SAGE1
Genatlas (Paris)SAGE1
WikiGenes55511
SOURCE (Princeton)SAGE1
Genetics Home Reference (NIH)SAGE1
Genomic and cartography
GoldenPath hg38 (UCSC)SAGE1  -     chrX:135893634-135913061 +  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAGE1  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblSAGE1 - Xq26.3 [CytoView hg19]  SAGE1 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBISAGE1 [Mapview hg19]  SAGE1 [Mapview hg38]
OMIM300359   
Gene and transcription
Genbank (Entrez)AJ278111 AK310412 BC144260 BF056519 CD358947
RefSeq transcript (Entrez)NM_018666
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAGE1
Cluster EST : UnigeneHs.195292 [ NCBI ]
CGAP (NCI)Hs.195292
Alternative Splicing GalleryENSG00000181433
Gene ExpressionSAGE1 [ NCBI-GEO ]   SAGE1 [ EBI - ARRAY_EXPRESS ]   SAGE1 [ SEEK ]   SAGE1 [ MEM ]
Gene Expression Viewer (FireBrowse)SAGE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55511
GTEX Portal (Tissue expression)SAGE1
Human Protein AtlasENSG00000181433-SAGE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXZ1
Splice isoforms : SwissVarQ9NXZ1
PhosPhoSitePlusQ9NXZ1
Domains : Interpro (EBI)INT_SG_DDX_CT_C   
Domain families : Pfam (Sanger)INT_SG_DDX_CT_C (PF15300)   
Domain families : Pfam (NCBI)pfam15300   
Conserved Domain (NCBI)SAGE1
DMDM Disease mutations55511
Blocks (Seattle)SAGE1
SuperfamilyQ9NXZ1
Human Protein Atlas [tissue]ENSG00000181433-SAGE1 [tissue]
Peptide AtlasQ9NXZ1
HPRD02290
IPIIPI00032901   IPI00922026   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXZ1
IntAct (EBI)Q9NXZ1
FunCoupENSG00000181433
BioGRIDSAGE1
STRING (EMBL)SAGE1
ZODIACSAGE1
Ontologies - Pathways
QuickGOQ9NXZ1
Ontology : AmiGOnucleus  nucleoplasm  integrator complex  snRNA 3'-end processing  
Ontology : EGO-EBInucleus  nucleoplasm  integrator complex  snRNA 3'-end processing  
NDEx NetworkSAGE1
Atlas of Cancer Signalling NetworkSAGE1
Wikipedia pathwaysSAGE1
Orthology - Evolution
OrthoDB55511
GeneTree (enSembl)ENSG00000181433
Phylogenetic Trees/Animal Genes : TreeFamSAGE1
HOVERGENQ9NXZ1
HOGENOMQ9NXZ1
Homologs : HomoloGeneSAGE1
Homology/Alignments : Family Browser (UCSC)SAGE1
Gene fusions - Rearrangements
Fusion : QuiverSAGE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAGE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAGE1
dbVarSAGE1
ClinVarSAGE1
1000_GenomesSAGE1 
Exome Variant ServerSAGE1
ExAC (Exome Aggregation Consortium)ENSG00000181433
GNOMAD BrowserENSG00000181433
Varsome BrowserSAGE1
Genetic variants : HAPMAP55511
Genomic Variants (DGV)SAGE1 [DGVbeta]
DECIPHERSAGE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAGE1 
Mutations
ICGC Data PortalSAGE1 
TCGA Data PortalSAGE1 
Broad Tumor PortalSAGE1
OASIS PortalSAGE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAGE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAGE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SAGE1
DgiDB (Drug Gene Interaction Database)SAGE1
DoCM (Curated mutations)SAGE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAGE1 (select a term)
intoGenSAGE1
Cancer3DSAGE1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300359   
Orphanet
DisGeNETSAGE1
MedgenSAGE1
Genetic Testing Registry SAGE1
NextProtQ9NXZ1 [Medical]
TSGene55511
GENETestsSAGE1
Target ValidationSAGE1
Huge Navigator SAGE1 [HugePedia]
snp3D : Map Gene to Disease55511
BioCentury BCIQSAGE1
ClinGenSAGE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55511
Chemical/Pharm GKB GenePA134909712
Clinical trialSAGE1
Miscellaneous
canSAR (ICR)SAGE1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAGE1
EVEXSAGE1
GoPubMedSAGE1
iHOPSAGE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:37:06 CET 2018

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