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SALL2 (spalt like transcription factor 2)

Identity

Alias_namessal (Drosophila)-like 2
sal-like 2 (Drosophila)
Alias_symbol (synonym)KIAA0360
Hsal2
ZNF795
Other aliasCOLB
HSAL2
Sal-2
p150(Sal2)
HGNC (Hugo) SALL2
LocusID (NCBI) 6297
Atlas_Id 46308
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 21521081 and ends at 21537216 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
METTL3 (14q11.2) / SALL2 (14q11.2)TTC21A (3p22.2) / SALL2 (14q11.2)METTL3 14q11.2 / SALL2 14q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SALL2   10526
Cards
Entrez_Gene (NCBI)SALL2  6297  spalt like transcription factor 2
AliasesCOLB; HSAL2; Sal-2; ZNF795; 
p150(Sal2)
GeneCards (Weizmann)SALL2
Ensembl hg19 (Hinxton)ENSG00000165821 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165821 [Gene_View]  chr14:21521081-21537216 [Contig_View]  SALL2 [Vega]
ICGC DataPortalENSG00000165821
TCGA cBioPortalSALL2
AceView (NCBI)SALL2
Genatlas (Paris)SALL2
WikiGenes6297
SOURCE (Princeton)SALL2
Genetics Home Reference (NIH)SALL2
Genomic and cartography
GoldenPath hg38 (UCSC)SALL2  -     chr14:21521081-21537216 -  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SALL2  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblSALL2 - 14q11.2 [CytoView hg19]  SALL2 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBISALL2 [Mapview hg19]  SALL2 [Mapview hg38]
OMIM216820   602219   
Gene and transcription
Genbank (Entrez)AB002358 AF465630 AK001276 AK289358 AK293574
RefSeq transcript (Entrez)NM_001291446 NM_001291447 NM_005407
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SALL2
Cluster EST : UnigeneHs.745364 [ NCBI ]
CGAP (NCI)Hs.745364
Alternative Splicing GalleryENSG00000165821
Gene ExpressionSALL2 [ NCBI-GEO ]   SALL2 [ EBI - ARRAY_EXPRESS ]   SALL2 [ SEEK ]   SALL2 [ MEM ]
Gene Expression Viewer (FireBrowse)SALL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6297
GTEX Portal (Tissue expression)SALL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y467   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y467  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y467
Splice isoforms : SwissVarQ9Y467
PhosPhoSitePlusQ9Y467
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)SALL2
DMDM Disease mutations6297
Blocks (Seattle)SALL2
SuperfamilyQ9Y467
Human Protein AtlasENSG00000165821
Peptide AtlasQ9Y467
HPRD03743
IPIIPI00144003   IPI00910517   IPI01010358   IPI01014132   IPI00297115   IPI01012706   IPI01012295   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y467
IntAct (EBI)Q9Y467
FunCoupENSG00000165821
BioGRIDSALL2
STRING (EMBL)SALL2
ZODIACSALL2
Ontologies - Pathways
QuickGOQ9Y467
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  eye development  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  signal transduction  NuRD complex  neural tube development  sequence-specific DNA binding  transcription regulatory region DNA binding  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  eye development  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  signal transduction  NuRD complex  neural tube development  sequence-specific DNA binding  transcription regulatory region DNA binding  metal ion binding  
NDEx NetworkSALL2
Atlas of Cancer Signalling NetworkSALL2
Wikipedia pathwaysSALL2
Orthology - Evolution
OrthoDB6297
GeneTree (enSembl)ENSG00000165821
Phylogenetic Trees/Animal Genes : TreeFamSALL2
HOVERGENQ9Y467
HOGENOMQ9Y467
Homologs : HomoloGeneSALL2
Homology/Alignments : Family Browser (UCSC)SALL2
Gene fusions - Rearrangements
Fusion : MitelmanMETTL3/SALL2 [14q11.2/14q11.2]  [t(14;14)(q11;q11)]  
Fusion: TCGAMETTL3 14q11.2 SALL2 14q11.2 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSALL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SALL2
dbVarSALL2
ClinVarSALL2
1000_GenomesSALL2 
Exome Variant ServerSALL2
ExAC (Exome Aggregation Consortium)SALL2 (select the gene name)
Genetic variants : HAPMAP6297
Genomic Variants (DGV)SALL2 [DGVbeta]
DECIPHERSALL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSALL2 
Mutations
ICGC Data PortalSALL2 
TCGA Data PortalSALL2 
Broad Tumor PortalSALL2
OASIS PortalSALL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSALL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSALL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SALL2
DgiDB (Drug Gene Interaction Database)SALL2
DoCM (Curated mutations)SALL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SALL2 (select a term)
intoGenSALL2
Cancer3DSALL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM216820    602219   
Orphanet13959    13964    13962    13963    13960    13961   
MedgenSALL2
Genetic Testing Registry SALL2
NextProtQ9Y467 [Medical]
TSGene6297
GENETestsSALL2
Target ValidationSALL2
Huge Navigator SALL2 [HugePedia]
snp3D : Map Gene to Disease6297
BioCentury BCIQSALL2
ClinGenSALL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6297
Chemical/Pharm GKB GenePA34934
Clinical trialSALL2
Miscellaneous
canSAR (ICR)SALL2 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSALL2
EVEXSALL2
GoPubMedSALL2
iHOPSALL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:54:20 CEST 2017

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