Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SALL3 (spalt-like transcription factor 3)

Identity

Other namesZNF796
HGNC (Hugo) SALL3
LocusID (NCBI) 27164
Location 18q23
Location_base_pair Starts at 76740275 and ends at 76758969 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SALL3   10527
Cards
Entrez_Gene (NCBI)SALL3  27164  spalt-like transcription factor 3
GeneCards (Weizmann)SALL3
Ensembl hg19 (Hinxton) [Gene_View]  chr18:76740275-76758969 [Contig_View]  SALL3 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:76740275-76758969 [Contig_View]  SALL3 [Vega]
cBioPortalSALL3
AceView (NCBI)SALL3
Genatlas (Paris)SALL3
WikiGenes27164
SOURCE (Princeton)SALL3
Genomic and cartography
GoldenPath hg19 (UCSC)SALL3  -     chr18:76740275-76758969 +  18q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SALL3  -     18q23   [Description]    (hg38-Dec_2013)
EnsemblSALL3 - 18q23 [CytoView hg19]  SALL3 - 18q23 [CytoView hg38]
Mapping of homologs : NCBISALL3 [Mapview hg19]  SALL3 [Mapview hg38]
OMIM605079   
Gene and transcription
Genbank (Entrez)AI569735 AW956238 BC148296
RefSeq transcript (Entrez)NM_171999
RefSeq genomic (Entrez)AC_000150 NC_000018 NC_018929 NG_030353 NT_010966 NT_187666 NW_001838473 NW_003315961 NW_004929411
Consensus coding sequences : CCDS (NCBI)SALL3
Cluster EST : UnigeneHs.700557 [ NCBI ]
CGAP (NCI)Hs.700557
Alternative Splicing : Fast-db (Paris)GSHG0014134
Gene ExpressionSALL3 [ NCBI-GEO ]     SALL3 [ SEEK ]   SALL3 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXA9 (Uniprot)
NextProtQ9BXA9  [Medical]
With graphics : InterProQ9BXA9
Splice isoforms : SwissVarQ9BXA9 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ9BXA9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations27164
Blocks (Seattle)Q9BXA9
Peptide AtlasQ9BXA9
HPRD05467
IPIIPI00074943   IPI00218121   IPI00218122   IPI00218124   IPI01013408   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXA9
IntAct (EBI)Q9BXA9
BioGRIDSALL3
IntegromeDBSALL3
STRING (EMBL)SALL3
Ontologies - Pathways
QuickGOQ9BXA9
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  olfactory bulb interneuron development  forelimb morphogenesis  hindlimb morphogenesis  negative regulation of smoothened signaling pathway  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  olfactory bulb interneuron development  forelimb morphogenesis  hindlimb morphogenesis  negative regulation of smoothened signaling pathway  metal ion binding  
Protein Interaction DatabaseSALL3
DoCM (Curated mutations)SALL3
Wikipedia pathwaysSALL3
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSALL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SALL3
dbVarSALL3
ClinVarSALL3
1000_GenomesSALL3 
Exome Variant ServerSALL3
SNP (GeneSNP Utah)SALL3
SNP : HGBaseSALL3
Genetic variants : HAPMAPSALL3
Genomic VariantsSALL3  SALL3 [DGVbeta]
Mutations
Somatic Mutations in Cancer : COSMICSALL3 
CONAN: Copy Number AnalysisSALL3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)18:76740275-76758969
Mutations and Diseases : HGMDSALL3
OMIM605079   
MedgenSALL3
NextProtQ9BXA9 [Medical]
GENETestsSALL3
Disease Genetic AssociationSALL3
Huge Navigator SALL3 [HugePedia]  SALL3 [HugeCancerGEM]
snp3D : Map Gene to Disease27164
DGIdb (Drug Gene Interaction db)SALL3
General knowledge
Homologs : HomoloGeneSALL3
Homology/Alignments : Family Browser (UCSC)SALL3
Phylogenetic Trees/Animal Genes : TreeFamSALL3
Chemical/Protein Interactions : CTD27164
Chemical/Pharm GKB GenePA34935
Clinical trialSALL3
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineSALL3
GoPubMedSALL3
iHOPSALL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:17:58 CET 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.