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SALL3 (spalt-like transcription factor 3)

Identity

Other namesZNF796
HGNC (Hugo) SALL3
LocusID (NCBI) 27164
Atlas_Id 50858
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 76740275 and ends at 76758969 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SALL3   10527
Cards
Entrez_Gene (NCBI)SALL3  27164  spalt-like transcription factor 3
AliasesZNF796
GeneCards (Weizmann)SALL3
Ensembl hg19 (Hinxton)ENSG00000256463 [Gene_View]  chr18:76740275-76758969 [Contig_View]  SALL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000256463 [Gene_View]  chr18:76740275-76758969 [Contig_View]  SALL3 [Vega]
ICGC DataPortalENSG00000256463
TCGA cBioPortalSALL3
AceView (NCBI)SALL3
Genatlas (Paris)SALL3
WikiGenes27164
SOURCE (Princeton)SALL3
Genomic and cartography
GoldenPath hg19 (UCSC)SALL3  -     chr18:76740275-76758969 +  18q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SALL3  -     18q23   [Description]    (hg38-Dec_2013)
EnsemblSALL3 - 18q23 [CytoView hg19]  SALL3 - 18q23 [CytoView hg38]
Mapping of homologs : NCBISALL3 [Mapview hg19]  SALL3 [Mapview hg38]
OMIM605079   
Gene and transcription
Genbank (Entrez)AI569735 AW956238 BC148296
RefSeq transcript (Entrez)NM_171999
RefSeq genomic (Entrez)NC_000018 NC_018929 NG_030353 NT_010966 NT_187666 NW_003315961 NW_004929411
Consensus coding sequences : CCDS (NCBI)SALL3
Cluster EST : UnigeneHs.700557 [ NCBI ]
CGAP (NCI)Hs.700557
Alternative Splicing GalleryENSG00000256463
Gene ExpressionSALL3 [ NCBI-GEO ]   SALL3 [ EBI - ARRAY_EXPRESS ]   SALL3 [ SEEK ]   SALL3 [ MEM ]
Gene Expression Viewer (FireBrowse)SALL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27164
GTEX Portal (Tissue expression)SALL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXA9 (Uniprot)
NextProtQ9BXA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXA9
Splice isoforms : SwissVarQ9BXA9 (Swissvar)
PhosPhoSitePlusQ9BXA9
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations27164
Blocks (Seattle)SALL3
SuperfamilyQ9BXA9
Human Protein AtlasENSG00000256463
Peptide AtlasQ9BXA9
HPRD05467
IPIIPI00074943   IPI00218121   IPI00218122   IPI00218124   IPI01013408   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXA9
IntAct (EBI)Q9BXA9
FunCoupENSG00000256463
BioGRIDSALL3
STRING (EMBL)SALL3
ZODIACSALL3
Ontologies - Pathways
QuickGOQ9BXA9
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  nucleus  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  signal transduction  olfactory bulb interneuron development  neurogenesis  forelimb morphogenesis  hindlimb morphogenesis  sequence-specific DNA binding  transcription regulatory region DNA binding  negative regulation of smoothened signaling pathway  metal ion binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  nucleus  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  signal transduction  olfactory bulb interneuron development  neurogenesis  forelimb morphogenesis  hindlimb morphogenesis  sequence-specific DNA binding  transcription regulatory region DNA binding  negative regulation of smoothened signaling pathway  metal ion binding  
NDEx NetworkSALL3
Atlas of Cancer Signalling NetworkSALL3
Wikipedia pathwaysSALL3
Orthology - Evolution
OrthoDB27164
GeneTree (enSembl)ENSG00000256463
Phylogenetic Trees/Animal Genes : TreeFamSALL3
Homologs : HomoloGeneSALL3
Homology/Alignments : Family Browser (UCSC)SALL3
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSALL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SALL3
dbVarSALL3
ClinVarSALL3
1000_GenomesSALL3 
Exome Variant ServerSALL3
ExAC (Exome Aggregation Consortium)SALL3 (select the gene name)
Genetic variants : HAPMAP27164
Genomic Variants (DGV)SALL3 [DGVbeta]
Mutations
ICGC Data PortalSALL3 
TCGA Data PortalSALL3 
Broad Tumor PortalSALL3
OASIS PortalSALL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSALL3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SALL3
DgiDB (Drug Gene Interaction Database)SALL3
DoCM (Curated mutations)SALL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SALL3 (select a term)
intoGenSALL3
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)18:76740275-76758969  ENSG00000256463
CONAN: Copy Number AnalysisSALL3 
Mutations and Diseases : HGMDSALL3
OMIM605079   
MedgenSALL3
Genetic Testing Registry SALL3
NextProtQ9BXA9 [Medical]
TSGene27164
GENETestsSALL3
Huge Navigator SALL3 [HugePedia]
snp3D : Map Gene to Disease27164
BioCentury BCIQSALL3
ClinGenSALL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27164
Chemical/Pharm GKB GenePA34935
Clinical trialSALL3
Miscellaneous
canSAR (ICR)SALL3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSALL3
EVEXSALL3
GoPubMedSALL3
iHOPSALL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 19:12:01 CEST 2016

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