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SALL3 (spalt-like transcription factor 3)

Identity

Other namesZNF796
HGNC (Hugo) SALL3
LocusID (NCBI) 27164
Location 18q23
Location_base_pair Starts at 76740275 and ends at 76758969 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SALL3   10527
Cards
Entrez_Gene (NCBI)SALL3  27164  spalt-like transcription factor 3
GeneCards (Weizmann)SALL3
Ensembl (Hinxton) [Gene_View]  chr18:76740275-76758969 [Contig_View]  SALL3 [Vega]
cBioPortalSALL3
AceView (NCBI)SALL3
Genatlas (Paris)SALL3
WikiGenes27164
SOURCE (Princeton)NM_171999
Genomic and cartography
GoldenPath (UCSC)SALL3  -  18q23   chr18:76740275-76758969 +  18q23   [Description]    (hg19-Feb_2009)
EnsemblSALL3 - 18q23 [CytoView]
Mapping of homologs : NCBISALL3 [Mapview]
OMIM605079   
Gene and transcription
Genbank (Entrez)AI569735 AW956238 BC148296
RefSeq transcript (Entrez)NM_171999
RefSeq genomic (Entrez)AC_000150 NC_000018 NC_018929 NG_030353 NT_010966 NT_187666 NW_001838473 NW_003315961 NW_004929411
Consensus coding sequences : CCDS (NCBI)SALL3
Cluster EST : UnigeneHs.700557 [ NCBI ]
CGAP (NCI)Hs.700557
Alternative Splicing : Fast-db (Paris)GSHG0014134
Gene ExpressionSALL3 [ NCBI-GEO ]     SALL3 [ SEEK ]   SALL3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXA9 (Uniprot)
NextProtQ9BXA9  [Medical]
With graphics : InterProQ9BXA9
Splice isoforms : SwissVarQ9BXA9 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2 [organisation]   Znf_C2H2-like [organisation]   Znf_C2H2/integrase_DNA-bd [organisation]  
Related proteins : CluSTrQ9BXA9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations27164
Blocks (Seattle)Q9BXA9
Peptide AtlasQ9BXA9
HPRD05467
IPIIPI00074943   IPI00218121   IPI00218122   IPI00218124   IPI01013408   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXA9
IntAct (EBI)Q9BXA9
BioGRIDSALL3
InParanoidQ9BXA9
Interologous Interaction database Q9BXA9
IntegromeDBSALL3
STRING (EMBL)SALL3
Ontologies - Pathways
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  olfactory bulb interneuron development  forelimb morphogenesis  hindlimb morphogenesis  negative regulation of smoothened signaling pathway  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  olfactory bulb interneuron development  forelimb morphogenesis  hindlimb morphogenesis  negative regulation of smoothened signaling pathway  metal ion binding  
Protein Interaction DatabaseSALL3
Wikipedia pathwaysSALL3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SALL3
snp3D : Map Gene to Disease27164
SNP (GeneSNP Utah)SALL3
SNP : HGBaseSALL3
Genetic variants : HAPMAPSALL3
Exome VariantSALL3
1000_GenomesSALL3 
Somatic Mutations in Cancer : COSMICSALL3 
CONAN: Copy Number AnalysisSALL3 
Mutations and Diseases : HGMDSALL3
Mutations and Diseases : intOGenSALL3
Genomic VariantsSALL3  SALL3 [DGVbeta]
dbVarSALL3
ClinVarSALL3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM605079   
MedgenSALL3
GENETestsSALL3
Disease Genetic AssociationSALL3
Huge Navigator SALL3 [HugePedia]  SALL3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSALL3
Homology/Alignments : Family Browser (UCSC)SALL3
Phylogenetic Trees/Animal Genes : TreeFamSALL3
Chemical/Protein Interactions : CTD27164
Chemical/Pharm GKB GenePA34935
Clinical trialSALL3
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineSALL3
iHOPSALL3
OncoSearchSALL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 17:03:46 CEST 2014

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