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SALL4 (spalt-like transcription factor 4)

Identity

Other namesDRRS
HSAL4
ZNF797
dJ1112F19.1
HGNC (Hugo) SALL4
LocusID (NCBI) 57167
Location 20q13.2
Location_base_pair Starts at 50400583 and ends at 50419048 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SALL4   15924
Cards
Entrez_Gene (NCBI)SALL4  57167  spalt-like transcription factor 4
GeneCards (Weizmann)SALL4
Ensembl hg19 (Hinxton)ENSG00000101115 [Gene_View]  chr20:50400583-50419048 [Contig_View]  SALL4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101115 [Gene_View]  chr20:50400583-50419048 [Contig_View]  SALL4 [Vega]
ICGC DataPortalENSG00000101115
cBioPortalSALL4
AceView (NCBI)SALL4
Genatlas (Paris)SALL4
WikiGenes57167
SOURCE (Princeton)SALL4
Genomic and cartography
GoldenPath hg19 (UCSC)SALL4  -     chr20:50400583-50419048 -  20q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SALL4  -     20q13.2   [Description]    (hg38-Dec_2013)
EnsemblSALL4 - 20q13.2 [CytoView hg19]  SALL4 - 20q13.2 [CytoView hg38]
Mapping of homologs : NCBISALL4 [Mapview hg19]  SALL4 [Mapview hg38]
OMIM147750   607323   607343   
Gene and transcription
Genbank (Entrez)AI638036 AK001666 AY170621 AY170622 AY172738
RefSeq transcript (Entrez)NM_020436
RefSeq genomic (Entrez)AC_000152 NC_000020 NC_018931 NG_008000 NT_011362 NW_001838666 NW_004929418
Consensus coding sequences : CCDS (NCBI)SALL4
Cluster EST : UnigeneHs.517113 [ NCBI ]
CGAP (NCI)Hs.517113
Alternative Splicing : Fast-db (Paris)GSHG0019263
Alternative Splicing GalleryENSG00000101115
Gene ExpressionSALL4 [ NCBI-GEO ]     SALL4 [ SEEK ]   SALL4 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJQ4 (Uniprot)
NextProtQ9UJQ4  [Medical]
With graphics : InterProQ9UJQ4
Splice isoforms : SwissVarQ9UJQ4 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ9UJQ4
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations57167
Blocks (Seattle)Q9UJQ4
Human Protein AtlasENSG00000101115
Peptide AtlasQ9UJQ4
HPRD08458
IPIIPI00007032   IPI00428772   IPI00428775   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJQ4
IntAct (EBI)Q9UJQ4
FunCoupENSG00000101115
BioGRIDSALL4
IntegromeDBSALL4
STRING (EMBL)SALL4
Ontologies - Pathways
QuickGOQ9UJQ4
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  heterochromatin  inner cell mass cell proliferation  neural tube closure  ventricular septum development  DNA binding  nucleus  cytoplasm  transcription, DNA-templated  stem cell maintenance  embryonic limb morphogenesis  protein complex  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  heterochromatin  inner cell mass cell proliferation  neural tube closure  ventricular septum development  DNA binding  nucleus  cytoplasm  transcription, DNA-templated  stem cell maintenance  embryonic limb morphogenesis  protein complex  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Protein Interaction DatabaseSALL4
DoCM (Curated mutations)SALL4
Wikipedia pathwaysSALL4
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSALL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SALL4
dbVarSALL4
ClinVarSALL4
1000_GenomesSALL4 
Exome Variant ServerSALL4
SNP (GeneSNP Utah)SALL4
SNP : HGBaseSALL4
Genetic variants : HAPMAPSALL4
Genomic VariantsSALL4  SALL4 [DGVbeta]
Mutations
ICGC Data PortalENSG00000101115 
Somatic Mutations in Cancer : COSMICSALL4 
CONAN: Copy Number AnalysisSALL4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)20:50400583-50419048
Mutations and Diseases : HGMDSALL4
OMIM147750    607323    607343   
MedgenSALL4
NextProtQ9UJQ4 [Medical]
GENETestsSALL4
Disease Genetic AssociationSALL4
Huge Navigator SALL4 [HugePedia]  SALL4 [HugeCancerGEM]
snp3D : Map Gene to Disease57167
DGIdb (Drug Gene Interaction db)SALL4
General knowledge
Homologs : HomoloGeneSALL4
Homology/Alignments : Family Browser (UCSC)SALL4
Phylogenetic Trees/Animal Genes : TreeFamSALL4
Chemical/Protein Interactions : CTD57167
Chemical/Pharm GKB GenePA34936
Clinical trialSALL4
Cancer Resource (Charite)ENSG00000101115
Other databases
Probes
Litterature
PubMed75 Pubmed reference(s) in Entrez
CoreMineSALL4
GoPubMedSALL4
iHOPSALL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:17:59 CET 2014

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