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SALL4 (spalt-like transcription factor 4)

Identity

Alias_namessal (Drosophila)-like 4
sal-like 4 (Drosophila)
Alias_symbol (synonym)dJ1112F19.1
ZNF797
HGNC (Hugo) SALL4
LocusID (NCBI) 57167
Atlas_Id 45524
Location 20q13.2  [Link to chromosome band 20q13]
Location_base_pair Starts at 50399256 and ends at 50419062 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SALL4   15924
LRG (Locus Reference Genomic)LRG_675
Cards
Entrez_Gene (NCBI)SALL4  57167  spalt-like transcription factor 4
AliasesDRRS; HSAL4; ZNF797
GeneCards (Weizmann)SALL4
Ensembl hg19 (Hinxton)ENSG00000101115 [Gene_View]  chr20:50399256-50419062 [Contig_View]  SALL4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101115 [Gene_View]  chr20:50399256-50419062 [Contig_View]  SALL4 [Vega]
ICGC DataPortalENSG00000101115
TCGA cBioPortalSALL4
AceView (NCBI)SALL4
Genatlas (Paris)SALL4
WikiGenes57167
SOURCE (Princeton)SALL4
Genetics Home Reference (NIH)SALL4
Genomic and cartography
GoldenPath hg19 (UCSC)SALL4  -     chr20:50399256-50419062 -  20q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SALL4  -     20q13.2   [Description]    (hg38-Dec_2013)
EnsemblSALL4 - 20q13.2 [CytoView hg19]  SALL4 - 20q13.2 [CytoView hg38]
Mapping of homologs : NCBISALL4 [Mapview hg19]  SALL4 [Mapview hg38]
OMIM147750   607323   607343   
Gene and transcription
Genbank (Entrez)AA419623 AA854044 AI638036 AK001666 AY170621
RefSeq transcript (Entrez)NM_001318031 NM_020436
RefSeq genomic (Entrez)NC_000020 NC_018931 NG_008000 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)SALL4
Cluster EST : UnigeneHs.517113 [ NCBI ]
CGAP (NCI)Hs.517113
Alternative Splicing GalleryENSG00000101115
Gene ExpressionSALL4 [ NCBI-GEO ]   SALL4 [ EBI - ARRAY_EXPRESS ]   SALL4 [ SEEK ]   SALL4 [ MEM ]
Gene Expression Viewer (FireBrowse)SALL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57167
GTEX Portal (Tissue expression)SALL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJQ4
Splice isoforms : SwissVarQ9UJQ4
PhosPhoSitePlusQ9UJQ4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)SALL4
DMDM Disease mutations57167
Blocks (Seattle)SALL4
SuperfamilyQ9UJQ4
Human Protein AtlasENSG00000101115
Peptide AtlasQ9UJQ4
HPRD08458
IPIIPI00007032   IPI00428772   IPI00428775   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJQ4
IntAct (EBI)Q9UJQ4
FunCoupENSG00000101115
BioGRIDSALL4
STRING (EMBL)SALL4
ZODIACSALL4
Ontologies - Pathways
QuickGOQ9UJQ4
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  heterochromatin  inner cell mass cell proliferation  neural tube closure  ventricular septum development  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  signal transduction  multicellular organism development  embryonic limb morphogenesis  somatic stem cell population maintenance  intracellular membrane-bounded organelle  protein complex  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  heterochromatin  inner cell mass cell proliferation  neural tube closure  ventricular septum development  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  signal transduction  multicellular organism development  embryonic limb morphogenesis  somatic stem cell population maintenance  intracellular membrane-bounded organelle  protein complex  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkSALL4
Atlas of Cancer Signalling NetworkSALL4
Wikipedia pathwaysSALL4
Orthology - Evolution
OrthoDB57167
GeneTree (enSembl)ENSG00000101115
Phylogenetic Trees/Animal Genes : TreeFamSALL4
HOVERGENQ9UJQ4
HOGENOMQ9UJQ4
Homologs : HomoloGeneSALL4
Homology/Alignments : Family Browser (UCSC)SALL4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSALL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SALL4
dbVarSALL4
ClinVarSALL4
1000_GenomesSALL4 
Exome Variant ServerSALL4
ExAC (Exome Aggregation Consortium)SALL4 (select the gene name)
Genetic variants : HAPMAP57167
Genomic Variants (DGV)SALL4 [DGVbeta]
DECIPHER (Syndromes)20:50399256-50419062  ENSG00000101115
CONAN: Copy Number AnalysisSALL4 
Mutations
ICGC Data PortalSALL4 
TCGA Data PortalSALL4 
Broad Tumor PortalSALL4
OASIS PortalSALL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSALL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSALL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SALL4
DgiDB (Drug Gene Interaction Database)SALL4
DoCM (Curated mutations)SALL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SALL4 (select a term)
intoGenSALL4
Cancer3DSALL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147750    607323    607343   
Orphanet1280    2168    19897    19898   
MedgenSALL4
Genetic Testing Registry SALL4
NextProtQ9UJQ4 [Medical]
TSGene57167
GENETestsSALL4
Huge Navigator SALL4 [HugePedia]
snp3D : Map Gene to Disease57167
BioCentury BCIQSALL4
ClinGenSALL4 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57167
Chemical/Pharm GKB GenePA34936
Clinical trialSALL4
Miscellaneous
canSAR (ICR)SALL4 (select the gene name)
Probes
Litterature
PubMed95 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSALL4
EVEXSALL4
GoPubMedSALL4
iHOPSALL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Nov 18 19:50:36 CET 2016

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