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SALRNA3 (senescence associated long non-coding RNA 3)

Identity

Alias_symbol (synonym)SAL-RNA3
XLOC_025918
Other alias
HGNC (Hugo) SALRNA3
LocusID (NCBI) 104548972
Atlas_Id 77141
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 70615547 and ends at 70616567 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SALRNA3   49002
Cards
Entrez_Gene (NCBI)SALRNA3  104548972  senescence associated long non-coding RNA 3
AliasesSAL-RNA3; XLOC_025918
GeneCards (Weizmann)SALRNA3
Ensembl hg19 (Hinxton)ENSG00000281264 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000281264 [Gene_View]  chr15:70615547-70616567 [Contig_View]  SALRNA3 [Vega]
ICGC DataPortalENSG00000281264
TCGA cBioPortalSALRNA3
AceView (NCBI)SALRNA3
Genatlas (Paris)SALRNA3
WikiGenes104548972
SOURCE (Princeton)SALRNA3
Genetics Home Reference (NIH)SALRNA3
Genomic and cartography
GoldenPath hg38 (UCSC)SALRNA3  -     chr15:70615547-70616567 +  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SALRNA3  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblSALRNA3 - 15q23 [CytoView hg19]  SALRNA3 - 15q23 [CytoView hg38]
Mapping of homologs : NCBISALRNA3 [Mapview hg19]  SALRNA3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SALRNA3
Alternative Splicing GalleryENSG00000281264
Gene ExpressionSALRNA3 [ NCBI-GEO ]   SALRNA3 [ EBI - ARRAY_EXPRESS ]   SALRNA3 [ SEEK ]   SALRNA3 [ MEM ]
Gene Expression Viewer (FireBrowse)SALRNA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104548972
GTEX Portal (Tissue expression)SALRNA3
Human Protein AtlasENSG00000281264-SALRNA3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SALRNA3
DMDM Disease mutations104548972
Blocks (Seattle)SALRNA3
Human Protein Atlas [tissue]ENSG00000281264-SALRNA3 [tissue]
Protein Interaction databases
FunCoupENSG00000281264
BioGRIDSALRNA3
STRING (EMBL)SALRNA3
ZODIACSALRNA3
Ontologies - Pathways
Huge Navigator SALRNA3 [HugePedia]
snp3D : Map Gene to Disease104548972
BioCentury BCIQSALRNA3
ClinGenSALRNA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104548972
Clinical trialSALRNA3
Miscellaneous
canSAR (ICR)SALRNA3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSALRNA3
EVEXSALRNA3
GoPubMedSALRNA3
iHOPSALRNA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Nov 20 20:11:06 CET 2017

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