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SAMD1 (sterile alpha motif domain containing 1)

Identity

Other alias-
HGNC (Hugo) SAMD1
LocusID (NCBI) 90378
Atlas_Id 72961
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14087846 and ends at 14090575 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAMD1   17958
Cards
Entrez_Gene (NCBI)SAMD1  90378  sterile alpha motif domain containing 1
Aliases
GeneCards (Weizmann)SAMD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:14087846-14090575 [Contig_View]  SAMD1 [Vega]
TCGA cBioPortalSAMD1
AceView (NCBI)SAMD1
Genatlas (Paris)SAMD1
WikiGenes90378
SOURCE (Princeton)SAMD1
Genetics Home Reference (NIH)SAMD1
Genomic and cartography
GoldenPath hg38 (UCSC)SAMD1  -     chr19:14087846-14090575 -  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAMD1  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblSAMD1 - 19p13.12 [CytoView hg19]  SAMD1 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBISAMD1 [Mapview hg19]  SAMD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY453840 BC007384 BC030129 BC065477 BC080588
RefSeq transcript (Entrez)NM_138352
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAMD1
Cluster EST : UnigeneHs.140309 [ NCBI ]
CGAP (NCI)Hs.140309
Gene ExpressionSAMD1 [ NCBI-GEO ]   SAMD1 [ EBI - ARRAY_EXPRESS ]   SAMD1 [ SEEK ]   SAMD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90378
GTEX Portal (Tissue expression)SAMD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6SPF0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6SPF0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6SPF0
Splice isoforms : SwissVarQ6SPF0
PhosPhoSitePlusQ6SPF0
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)SAM    SAM/pointed   
Domain families : Pfam (Sanger)SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00536   
Domain families : Smart (EMBL)SAM (SM00454)  
Conserved Domain (NCBI)SAMD1
DMDM Disease mutations90378
Blocks (Seattle)SAMD1
SuperfamilyQ6SPF0
Peptide AtlasQ6SPF0
HPRD18011
IPIIPI00395474   IPI00977446   
Protein Interaction databases
DIP (DOE-UCLA)Q6SPF0
IntAct (EBI)Q6SPF0
BioGRIDSAMD1
STRING (EMBL)SAMD1
ZODIACSAMD1
Ontologies - Pathways
QuickGOQ6SPF0
Ontology : AmiGOextracellular region  cytoplasm  
Ontology : EGO-EBIextracellular region  cytoplasm  
NDEx NetworkSAMD1
Atlas of Cancer Signalling NetworkSAMD1
Wikipedia pathwaysSAMD1
Orthology - Evolution
OrthoDB90378
Phylogenetic Trees/Animal Genes : TreeFamSAMD1
HOVERGENQ6SPF0
HOGENOMQ6SPF0
Homologs : HomoloGeneSAMD1
Homology/Alignments : Family Browser (UCSC)SAMD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD1
dbVarSAMD1
ClinVarSAMD1
1000_GenomesSAMD1 
Exome Variant ServerSAMD1
ExAC (Exome Aggregation Consortium)SAMD1 (select the gene name)
Genetic variants : HAPMAP90378
Genomic Variants (DGV)SAMD1 [DGVbeta]
DECIPHERSAMD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAMD1 
Mutations
ICGC Data PortalSAMD1 
TCGA Data PortalSAMD1 
Broad Tumor PortalSAMD1
OASIS PortalSAMD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAMD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAMD1
DgiDB (Drug Gene Interaction Database)SAMD1
DoCM (Curated mutations)SAMD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAMD1 (select a term)
intoGenSAMD1
Cancer3DSAMD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSAMD1
Genetic Testing Registry SAMD1
NextProtQ6SPF0 [Medical]
TSGene90378
GENETestsSAMD1
Target ValidationSAMD1
Huge Navigator SAMD1 [HugePedia]
snp3D : Map Gene to Disease90378
BioCentury BCIQSAMD1
ClinGenSAMD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90378
Chemical/Pharm GKB GenePA34937
Clinical trialSAMD1
Miscellaneous
canSAR (ICR)SAMD1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD1
EVEXSAMD1
GoPubMedSAMD1
iHOPSAMD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:48 CEST 2017

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