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SAMD10 (sterile alpha motif domain containing 10)

Identity

Alias (NCBI)C20orf136
dJ591C20
dJ591C20.7
HGNC (Hugo) SAMD10
HGNC Previous nameC20orf136
HGNC Previous namechromosome 20 open reading frame 136
LocusID (NCBI) 140700
Atlas_Id 72962
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63974116 and ends at 63979642 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SAMD10 (20q13.33) / SAMD10 (20q13.33)UCKL1 (20q13.33) / SAMD10 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SAMD10   16129
Cards
Entrez_Gene (NCBI)SAMD10    sterile alpha motif domain containing 10
AliasesC20orf136; dJ591C20; dJ591C20.7
GeneCards (Weizmann)SAMD10
Ensembl hg19 (Hinxton)ENSG00000130590 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130590 [Gene_View]  ENSG00000130590 [Sequence]  chr20:63974116-63979642 [Contig_View]  SAMD10 [Vega]
ICGC DataPortalENSG00000130590
TCGA cBioPortalSAMD10
AceView (NCBI)SAMD10
Genatlas (Paris)SAMD10
SOURCE (Princeton)SAMD10
Genetics Home Reference (NIH)SAMD10
Genomic and cartography
GoldenPath hg38 (UCSC)SAMD10  -     chr20:63974116-63979642 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAMD10  -     20q13.33   [Description]    (hg19-Feb_2009)
GoldenPathSAMD10 - 20q13.33 [CytoView hg19]  SAMD10 - 20q13.33 [CytoView hg38]
ImmunoBaseENSG00000130590
Genome Data Viewer NCBISAMD10 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI866764 BC041436 BC067362 BM839907
RefSeq transcript (Entrez)NM_080621
Consensus coding sequences : CCDS (NCBI)SAMD10
Gene ExpressionSAMD10 [ NCBI-GEO ]   SAMD10 [ EBI - ARRAY_EXPRESS ]   SAMD10 [ SEEK ]   SAMD10 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD10 [ Firebrowse - Broad ]
GenevisibleExpression of SAMD10 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140700
GTEX Portal (Tissue expression)SAMD10
Human Protein AtlasENSG00000130590-SAMD10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYL1
PhosPhoSitePlusQ9BYL1
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)Aveugle-like_SAM_dom    SAM    SAM/pointed_sf   
Domain families : Pfam (Sanger)SAM_2 (PF07647)   
Domain families : Pfam (NCBI)pfam07647   
Domain families : Smart (EMBL)SAM (SM00454)  
Conserved Domain (NCBI)SAMD10
SuperfamilyQ9BYL1
AlphaFold pdb e-kbQ9BYL1   
Human Protein Atlas [tissue]ENSG00000130590-SAMD10 [tissue]
HPRD15292
Protein Interaction databases
DIP (DOE-UCLA)Q9BYL1
IntAct (EBI)Q9BYL1
BioGRIDSAMD10
STRING (EMBL)SAMD10
ZODIACSAMD10
Ontologies - Pathways
QuickGOQ9BYL1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSAMD10
Atlas of Cancer Signalling NetworkSAMD10
Wikipedia pathwaysSAMD10
Orthology - Evolution
OrthoDB140700
GeneTree (enSembl)ENSG00000130590
Phylogenetic Trees/Animal Genes : TreeFamSAMD10
Homologs : HomoloGeneSAMD10
Homology/Alignments : Family Browser (UCSC)SAMD10
Gene fusions - Rearrangements
Fusion : QuiverSAMD10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD10
dbVarSAMD10
ClinVarSAMD10
MonarchSAMD10
1000_GenomesSAMD10 
Exome Variant ServerSAMD10
GNOMAD BrowserENSG00000130590
Varsome BrowserSAMD10
ACMGSAMD10 variants
VarityQ9BYL1
Genomic Variants (DGV)SAMD10 [DGVbeta]
DECIPHERSAMD10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAMD10 
Mutations
ICGC Data PortalSAMD10 
TCGA Data PortalSAMD10 
Broad Tumor PortalSAMD10
OASIS PortalSAMD10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSAMD10
Mutations and Diseases : HGMDSAMD10
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSAMD10
DgiDB (Drug Gene Interaction Database)SAMD10
DoCM (Curated mutations)SAMD10
CIViC (Clinical Interpretations of Variants in Cancer)SAMD10
Cancer3DSAMD10
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSAMD10
MedgenSAMD10
Genetic Testing Registry SAMD10
NextProtQ9BYL1 [Medical]
GENETestsSAMD10
Target ValidationSAMD10
Huge Navigator SAMD10 [HugePedia]
ClinGenSAMD10
Clinical trials, drugs, therapy
MyCancerGenomeSAMD10
Protein Interactions : CTDSAMD10
Pharm GKB GenePA25678
PharosQ9BYL1
Clinical trialSAMD10
Miscellaneous
canSAR (ICR)SAMD10
HarmonizomeSAMD10
DataMed IndexSAMD10
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSAMD10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:19:44 CEST 2021

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