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SAMD10 (sterile alpha motif domain containing 10)

Identity

Alias_namesC20orf136
chromosome 20 open reading frame 136
Other aliasdJ591C20
dJ591C20.7
HGNC (Hugo) SAMD10
LocusID (NCBI) 140700
Atlas_Id 72962
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62605466 and ends at 62610995 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SAMD10 (20q13.33) / SAMD10 (20q13.33)UCKL1 (20q13.33) / SAMD10 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAMD10   16129
Cards
Entrez_Gene (NCBI)SAMD10  140700  sterile alpha motif domain containing 10
AliasesC20orf136; dJ591C20; dJ591C20.7
GeneCards (Weizmann)SAMD10
Ensembl hg19 (Hinxton)ENSG00000130590 [Gene_View]  chr20:62605466-62610995 [Contig_View]  SAMD10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130590 [Gene_View]  chr20:62605466-62610995 [Contig_View]  SAMD10 [Vega]
ICGC DataPortalENSG00000130590
TCGA cBioPortalSAMD10
AceView (NCBI)SAMD10
Genatlas (Paris)SAMD10
WikiGenes140700
SOURCE (Princeton)SAMD10
Genetics Home Reference (NIH)SAMD10
Genomic and cartography
GoldenPath hg19 (UCSC)SAMD10  -     chr20:62605466-62610995 -  20q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SAMD10  -     20q13.33   [Description]    (hg38-Dec_2013)
EnsemblSAMD10 - 20q13.33 [CytoView hg19]  SAMD10 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBISAMD10 [Mapview hg19]  SAMD10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI866764 BC041436 BC067362 BM839907
RefSeq transcript (Entrez)NM_080621
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929419
Consensus coding sequences : CCDS (NCBI)SAMD10
Cluster EST : UnigeneHs.27189 [ NCBI ]
CGAP (NCI)Hs.27189
Alternative Splicing GalleryENSG00000130590
Gene ExpressionSAMD10 [ NCBI-GEO ]   SAMD10 [ EBI - ARRAY_EXPRESS ]   SAMD10 [ SEEK ]   SAMD10 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140700
GTEX Portal (Tissue expression)SAMD10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYL1
Splice isoforms : SwissVarQ9BYL1
PhosPhoSitePlusQ9BYL1
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)SAM    SAM/pointed    SAM_2   
Domain families : Pfam (Sanger)SAM_2 (PF07647)   
Domain families : Pfam (NCBI)pfam07647   
Domain families : Smart (EMBL)SAM (SM00454)  
Conserved Domain (NCBI)SAMD10
DMDM Disease mutations140700
Blocks (Seattle)SAMD10
SuperfamilyQ9BYL1
Human Protein AtlasENSG00000130590
Peptide AtlasQ9BYL1
HPRD15292
IPIIPI00000974   IPI00552619   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYL1
IntAct (EBI)Q9BYL1
FunCoupENSG00000130590
BioGRIDSAMD10
STRING (EMBL)SAMD10
ZODIACSAMD10
Ontologies - Pathways
QuickGOQ9BYL1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSAMD10
Atlas of Cancer Signalling NetworkSAMD10
Wikipedia pathwaysSAMD10
Orthology - Evolution
OrthoDB140700
GeneTree (enSembl)ENSG00000130590
Phylogenetic Trees/Animal Genes : TreeFamSAMD10
HOVERGENQ9BYL1
HOGENOMQ9BYL1
Homologs : HomoloGeneSAMD10
Homology/Alignments : Family Browser (UCSC)SAMD10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD10
dbVarSAMD10
ClinVarSAMD10
1000_GenomesSAMD10 
Exome Variant ServerSAMD10
ExAC (Exome Aggregation Consortium)SAMD10 (select the gene name)
Genetic variants : HAPMAP140700
Genomic Variants (DGV)SAMD10 [DGVbeta]
DECIPHER (Syndromes)20:62605466-62610995  ENSG00000130590
CONAN: Copy Number AnalysisSAMD10 
Mutations
ICGC Data PortalSAMD10 
TCGA Data PortalSAMD10 
Broad Tumor PortalSAMD10
OASIS PortalSAMD10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAMD10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAMD10
DgiDB (Drug Gene Interaction Database)SAMD10
DoCM (Curated mutations)SAMD10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAMD10 (select a term)
intoGenSAMD10
Cancer3DSAMD10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSAMD10
Genetic Testing Registry SAMD10
NextProtQ9BYL1 [Medical]
TSGene140700
GENETestsSAMD10
Huge Navigator SAMD10 [HugePedia]
snp3D : Map Gene to Disease140700
BioCentury BCIQSAMD10
ClinGenSAMD10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140700
Chemical/Pharm GKB GenePA25678
Clinical trialSAMD10
Miscellaneous
canSAR (ICR)SAMD10 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD10
EVEXSAMD10
GoPubMedSAMD10
iHOPSAMD10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:14 CET 2017

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