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SAMD11 (sterile alpha motif domain containing 11)

Identity

Alias_symbol (synonym)MGC45873
Other aliasMRS
HGNC (Hugo) SAMD11
LocusID (NCBI) 148398
Atlas_Id 72963
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 925741 and ends at 944581 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CERS5 (12q13.12) / SAMD11 (1p36.33)SAMD11 (1p36.33) / FADS2 (11q12.2)SAMD11 (1p36.33) / NOC4L (12q24.33)
SAMD11 (1p36.33) / ZFYVE27 (10q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;12)(p36;q13) CERS5/SAMD11

External links

Nomenclature
HGNC (Hugo)SAMD11   28706
Cards
Entrez_Gene (NCBI)SAMD11  148398  sterile alpha motif domain containing 11
AliasesMRS
GeneCards (Weizmann)SAMD11
Ensembl hg19 (Hinxton)ENSG00000187634 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187634 [Gene_View]  chr1:925741-944581 [Contig_View]  SAMD11 [Vega]
ICGC DataPortalENSG00000187634
TCGA cBioPortalSAMD11
AceView (NCBI)SAMD11
Genatlas (Paris)SAMD11
WikiGenes148398
SOURCE (Princeton)SAMD11
Genetics Home Reference (NIH)SAMD11
Genomic and cartography
GoldenPath hg38 (UCSC)SAMD11  -     chr1:925741-944581 +  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAMD11  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblSAMD11 - 1p36.33 [CytoView hg19]  SAMD11 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBISAMD11 [Mapview hg19]  SAMD11 [Mapview hg38]
OMIM616765   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_152486
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAMD11
Cluster EST : UnigeneHs.335293 [ NCBI ]
CGAP (NCI)Hs.335293
Alternative Splicing GalleryENSG00000187634
Gene ExpressionSAMD11 [ NCBI-GEO ]   SAMD11 [ EBI - ARRAY_EXPRESS ]   SAMD11 [ SEEK ]   SAMD11 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148398
GTEX Portal (Tissue expression)SAMD11
Human Protein AtlasENSG00000187634-SAMD11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NU1
Splice isoforms : SwissVarQ96NU1
PhosPhoSitePlusQ96NU1
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)SAM    SAM/pointed   
Domain families : Pfam (Sanger)SAM_2 (PF07647)   
Domain families : Pfam (NCBI)pfam07647   
Domain families : Smart (EMBL)SAM (SM00454)  
Conserved Domain (NCBI)SAMD11
DMDM Disease mutations148398
Blocks (Seattle)SAMD11
SuperfamilyQ96NU1
Human Protein Atlas [tissue]ENSG00000187634-SAMD11 [tissue]
Peptide AtlasQ96NU1
HPRD10081
IPIIPI00166122   IPI00289432   IPI00549744   IPI00000594   IPI00874096   IPI00853584   
Protein Interaction databases
DIP (DOE-UCLA)Q96NU1
IntAct (EBI)Q96NU1
FunCoupENSG00000187634
BioGRIDSAMD11
STRING (EMBL)SAMD11
ZODIACSAMD11
Ontologies - Pathways
QuickGOQ96NU1
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkSAMD11
Atlas of Cancer Signalling NetworkSAMD11
Wikipedia pathwaysSAMD11
Orthology - Evolution
OrthoDB148398
GeneTree (enSembl)ENSG00000187634
Phylogenetic Trees/Animal Genes : TreeFamSAMD11
HOVERGENQ96NU1
HOGENOMQ96NU1
Homologs : HomoloGeneSAMD11
Homology/Alignments : Family Browser (UCSC)SAMD11
Gene fusions - Rearrangements
Fusion : QuiverSAMD11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD11
dbVarSAMD11
ClinVarSAMD11
1000_GenomesSAMD11 
Exome Variant ServerSAMD11
ExAC (Exome Aggregation Consortium)ENSG00000187634
GNOMAD BrowserENSG00000187634
Genetic variants : HAPMAP148398
Genomic Variants (DGV)SAMD11 [DGVbeta]
DECIPHERSAMD11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAMD11 
Mutations
ICGC Data PortalSAMD11 
TCGA Data PortalSAMD11 
Broad Tumor PortalSAMD11
OASIS PortalSAMD11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAMD11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAMD11
DgiDB (Drug Gene Interaction Database)SAMD11
DoCM (Curated mutations)SAMD11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAMD11 (select a term)
intoGenSAMD11
Cancer3DSAMD11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616765   
Orphanet
DisGeNETSAMD11
MedgenSAMD11
Genetic Testing Registry SAMD11
NextProtQ96NU1 [Medical]
TSGene148398
GENETestsSAMD11
Target ValidationSAMD11
Huge Navigator SAMD11 [HugePedia]
snp3D : Map Gene to Disease148398
BioCentury BCIQSAMD11
ClinGenSAMD11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148398
Chemical/Pharm GKB GenePA134968665
Clinical trialSAMD11
Miscellaneous
canSAR (ICR)SAMD11 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD11
EVEXSAMD11
GoPubMedSAMD11
iHOPSAMD11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:50:34 CET 2018
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