Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SAMD12-AS1 (SAMD12 antisense RNA 1)

Identity

Alias_namesC8orf26
NCRNA00252
chromosome 8 open reading frame 26
non-protein coding RNA 252
SAMD12 antisense RNA 1 (non-protein coding)
Other alias
HGNC (Hugo) SAMD12-AS1
LocusID (NCBI) 552860
Atlas_Id 72964
Location 8q24.12  [Link to chromosome band 8q24]
Location_base_pair Starts at 118621001 and ends at 118726067 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAMD12-AS1   30937
Cards
Entrez_Gene (NCBI)SAMD12-AS1  552860  SAMD12 antisense RNA 1
AliasesC8orf26; NCRNA00252
GeneCards (Weizmann)SAMD12-AS1
Ensembl hg19 (Hinxton)ENSG00000281641 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000281641 [Gene_View]  chr8:118621001-118726067 [Contig_View]  SAMD12-AS1 [Vega]
ICGC DataPortalENSG00000281641
TCGA cBioPortalSAMD12-AS1
AceView (NCBI)SAMD12-AS1
Genatlas (Paris)SAMD12-AS1
WikiGenes552860
SOURCE (Princeton)SAMD12-AS1
Genetics Home Reference (NIH)SAMD12-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SAMD12-AS1  -     chr8:118621001-118726067 +  8q24.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAMD12-AS1  -     8q24.12   [Description]    (hg19-Feb_2009)
EnsemblSAMD12-AS1 - 8q24.12 [CytoView hg19]  SAMD12-AS1 - 8q24.12 [CytoView hg38]
Mapping of homologs : NCBISAMD12-AS1 [Mapview hg19]  SAMD12-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE069098 BF368547 DB096108
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAMD12-AS1
Cluster EST : UnigeneHs.571527 [ NCBI ]
CGAP (NCI)Hs.571527
Alternative Splicing GalleryENSG00000281641
Gene ExpressionSAMD12-AS1 [ NCBI-GEO ]   SAMD12-AS1 [ EBI - ARRAY_EXPRESS ]   SAMD12-AS1 [ SEEK ]   SAMD12-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD12-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)552860
GTEX Portal (Tissue expression)SAMD12-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SAMD12-AS1
DMDM Disease mutations552860
Blocks (Seattle)SAMD12-AS1
Human Protein AtlasENSG00000281641
Protein Interaction databases
FunCoupENSG00000281641
BioGRIDSAMD12-AS1
STRING (EMBL)SAMD12-AS1
ZODIACSAMD12-AS1
Ontologies - Pathways
Huge Navigator SAMD12-AS1 [HugePedia]
snp3D : Map Gene to Disease552860
BioCentury BCIQSAMD12-AS1
ClinGenSAMD12-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD552860
Chemical/Pharm GKB GenePA165585765
Clinical trialSAMD12-AS1
Miscellaneous
canSAR (ICR)SAMD12-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD12-AS1
EVEXSAMD12-AS1
GoPubMedSAMD12-AS1
iHOPSAMD12-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:08 CEST 2017

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