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SAMD12 (sterile alpha motif domain containing 12)

Identity

Alias_symbol (synonym)FLJ39458
Other alias-
HGNC (Hugo) SAMD12
LocusID (NCBI) 401474
Atlas_Id 53042
Location 8q24.12  [Link to chromosome band 8q24]
Location_base_pair Starts at 119201695 and ends at 119634184 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ASAP1 (8q24.21) / SAMD12 (8q24.12)EXT1 (8q24.11) / SAMD12 (8q24.12)NSF (17q21.31) / SAMD12 (8q24.12)
PHF20L1 (8q24.22) / SAMD12 (8q24.12)PPP2CA (5q31.1) / SAMD12 (8q24.12)RAB7A (3q21.3) / SAMD12 (8q24.12)
SAMD12 (8q24.12) / CAB39 (2q37.1)SAMD12 (8q24.12) / FDCSP (4q13.3)SAMD12 (8q24.12) / PHF20L1 (8q24.22)
SAMD12 (8q24.12) / PPP2CA (5q31.1)SAMD12 (8q24.12) / PVT1 (8q24.21)SAMD12 (8q24.12) / RTN1 (14q23.1)
SAMD12 (8q24.12) / SAMHD1 (20q11.23)SAMD12 (8q24.12) / SNTB1 (8q24.12)SAMD12 (8q24.12) / SYBU (8q23.2)
SAMD12 (8q24.12) / USP37 (2q35)USP37 (2q35) / SAMD12 (8q24.12)ASAP1 8q24.21 / SAMD12 8q24.12
EXT1 8q24.11 / SAMD12 8q24.12SAMD12 8q24.12 C4orf7SAMD12 8q24.12 / RTN1 14q23.1
SAMD12 8q24.12 / SAMHD1 20q11.23SAMD12 8q24.12 / SNTB1 8q24.12SAMD12 8q24.12 / SYBU 8q23.2
SAMD12 8q24.12 / USP37 2q35USP37 2q35 / SAMD12 8q24.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAMD12   31750
Cards
Entrez_Gene (NCBI)SAMD12  401474  sterile alpha motif domain containing 12
Aliases
GeneCards (Weizmann)SAMD12
Ensembl hg19 (Hinxton)ENSG00000177570 [Gene_View]  chr8:119201695-119634184 [Contig_View]  SAMD12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177570 [Gene_View]  chr8:119201695-119634184 [Contig_View]  SAMD12 [Vega]
ICGC DataPortalENSG00000177570
TCGA cBioPortalSAMD12
AceView (NCBI)SAMD12
Genatlas (Paris)SAMD12
WikiGenes401474
SOURCE (Princeton)SAMD12
Genetics Home Reference (NIH)SAMD12
Genomic and cartography
GoldenPath hg19 (UCSC)SAMD12  -     chr8:119201695-119634184 -  8q24.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SAMD12  -     8q24.12   [Description]    (hg38-Dec_2013)
EnsemblSAMD12 - 8q24.12 [CytoView hg19]  SAMD12 - 8q24.12 [CytoView hg38]
Mapping of homologs : NCBISAMD12 [Mapview hg19]  SAMD12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096777 AK311704 BC121818 BC124554 BF326714
RefSeq transcript (Entrez)NM_001101676 NM_207506
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)SAMD12
Cluster EST : UnigeneHs.701196 [ NCBI ]
CGAP (NCI)Hs.701196
Alternative Splicing GalleryENSG00000177570
Gene ExpressionSAMD12 [ NCBI-GEO ]   SAMD12 [ EBI - ARRAY_EXPRESS ]   SAMD12 [ SEEK ]   SAMD12 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401474
GTEX Portal (Tissue expression)SAMD12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8I0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8I0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8I0
Splice isoforms : SwissVarQ8N8I0
PhosPhoSitePlusQ8N8I0
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)SAM    SAM/pointed   
Domain families : Pfam (Sanger)SAM_2 (PF07647)   
Domain families : Pfam (NCBI)pfam07647   
Domain families : Smart (EMBL)SAM (SM00454)  
Conserved Domain (NCBI)SAMD12
DMDM Disease mutations401474
Blocks (Seattle)SAMD12
SuperfamilyQ8N8I0
Human Protein AtlasENSG00000177570
Peptide AtlasQ8N8I0
HPRD15293
IPIIPI00410332   IPI00855742   IPI00797194   IPI00974107   IPI00979236   IPI00978613   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8I0
IntAct (EBI)Q8N8I0
FunCoupENSG00000177570
BioGRIDSAMD12
STRING (EMBL)SAMD12
ZODIACSAMD12
Ontologies - Pathways
QuickGOQ8N8I0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSAMD12
Atlas of Cancer Signalling NetworkSAMD12
Wikipedia pathwaysSAMD12
Orthology - Evolution
OrthoDB401474
GeneTree (enSembl)ENSG00000177570
Phylogenetic Trees/Animal Genes : TreeFamSAMD12
HOVERGENQ8N8I0
HOGENOMQ8N8I0
Homologs : HomoloGeneSAMD12
Homology/Alignments : Family Browser (UCSC)SAMD12
Gene fusions - Rearrangements
Fusion : MitelmanASAP1/SAMD12 [8q24.21/8q24.12]  [t(8;8)(q24;q24)]  
Fusion : MitelmanEXT1/SAMD12 [8q24.11/8q24.12]  [t(8;8)(q24;q24)]  
Fusion : MitelmanPHF20L1/SAMD12 [8q24.22/8q24.12]  [inv(8)(q24q24)]  [t(8;8)(q24;q24)]  
Fusion : MitelmanSAMD12/FDCSP [8q24.12/4q13.3]  [t(4;8)(q13;q24)]  
Fusion : MitelmanSAMD12/RTN1 [8q24.12/14q23.1]  [t(8;14)(q24;q23)]  
Fusion : MitelmanSAMD12/SAMHD1 [8q24.12/20q11.23]  [t(8;20)(q24;q11)]  
Fusion : MitelmanSAMD12/SNTB1 [8q24.12/8q24.12]  [t(8;8)(q24;q24)]  
Fusion : MitelmanSAMD12/SYBU [8q24.12/8q23.2]  [t(8;8)(q23;q24)]  
Fusion : MitelmanSAMD12/USP37 [8q24.12/2q35]  [t(2;8)(q35;q24)]  
Fusion : MitelmanUSP37/SAMD12 [2q35/8q24.12]  [t(2;8)(q35;q24)]  
Fusion: TCGAASAP1 8q24.21 SAMD12 8q24.12 LUAD
Fusion: TCGAEXT1 8q24.11 SAMD12 8q24.12 BRCA HNSC
Fusion: TCGASAMD12 8q24.12 C4orf7 BRCA
Fusion: TCGASAMD12 8q24.12 RTN1 14q23.1 LUSC
Fusion: TCGASAMD12 8q24.12 SAMHD1 20q11.23 HNSC
Fusion: TCGASAMD12 8q24.12 SNTB1 8q24.12 OV
Fusion: TCGASAMD12 8q24.12 SYBU 8q23.2 BRCA
Fusion: TCGASAMD12 8q24.12 USP37 2q35 BRCA
Fusion: TCGAUSP37 2q35 SAMD12 8q24.12 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD12
dbVarSAMD12
ClinVarSAMD12
1000_GenomesSAMD12 
Exome Variant ServerSAMD12
ExAC (Exome Aggregation Consortium)SAMD12 (select the gene name)
Genetic variants : HAPMAP401474
Genomic Variants (DGV)SAMD12 [DGVbeta]
DECIPHER (Syndromes)8:119201695-119634184  ENSG00000177570
CONAN: Copy Number AnalysisSAMD12 
Mutations
ICGC Data PortalSAMD12 
TCGA Data PortalSAMD12 
Broad Tumor PortalSAMD12
OASIS PortalSAMD12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAMD12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAMD12
DgiDB (Drug Gene Interaction Database)SAMD12
DoCM (Curated mutations)SAMD12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAMD12 (select a term)
intoGenSAMD12
Cancer3DSAMD12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSAMD12
Genetic Testing Registry SAMD12
NextProtQ8N8I0 [Medical]
TSGene401474
GENETestsSAMD12
Huge Navigator SAMD12 [HugePedia]
snp3D : Map Gene to Disease401474
BioCentury BCIQSAMD12
ClinGenSAMD12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401474
Chemical/Pharm GKB GenePA134993493
Clinical trialSAMD12
Miscellaneous
canSAR (ICR)SAMD12 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD12
EVEXSAMD12
GoPubMedSAMD12
iHOPSAMD12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:18:18 CEST 2017

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