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SAMD13 (sterile alpha motif domain containing 13)

Identity

Other aliasHSD-41
HSD-42
HGNC (Hugo) SAMD13
LocusID (NCBI) 148418
Atlas_Id 46706
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 84298366 and ends at 84350798 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TTLL7 (1p31.1) / SAMD13 (1p31.1)TTLL7 1p31.1 / SAMD13 1p31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAMD13   24582
Cards
Entrez_Gene (NCBI)SAMD13  148418  sterile alpha motif domain containing 13
AliasesHSD-41; HSD-42
GeneCards (Weizmann)SAMD13
Ensembl hg19 (Hinxton)ENSG00000203943 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203943 [Gene_View]  chr1:84298366-84350798 [Contig_View]  SAMD13 [Vega]
ICGC DataPortalENSG00000203943
TCGA cBioPortalSAMD13
AceView (NCBI)SAMD13
Genatlas (Paris)SAMD13
WikiGenes148418
SOURCE (Princeton)SAMD13
Genetics Home Reference (NIH)SAMD13
Genomic and cartography
GoldenPath hg38 (UCSC)SAMD13  -     chr1:84298366-84350798 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAMD13  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblSAMD13 - 1p31.1 [CytoView hg19]  SAMD13 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBISAMD13 [Mapview hg19]  SAMD13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056937 AK311207 AY604569 AY604570 BC037973
RefSeq transcript (Entrez)NM_001010971 NM_001134663 NM_001134664
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAMD13
Cluster EST : UnigeneHs.591445 [ NCBI ]
CGAP (NCI)Hs.591445
Alternative Splicing GalleryENSG00000203943
Gene ExpressionSAMD13 [ NCBI-GEO ]   SAMD13 [ EBI - ARRAY_EXPRESS ]   SAMD13 [ SEEK ]   SAMD13 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148418
GTEX Portal (Tissue expression)SAMD13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VXD3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VXD3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VXD3
Splice isoforms : SwissVarQ5VXD3
PhosPhoSitePlusQ5VXD3
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)SAM    SAM/pointed   
Domain families : Pfam (Sanger)SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00536   
Conserved Domain (NCBI)SAMD13
DMDM Disease mutations148418
Blocks (Seattle)SAMD13
SuperfamilyQ5VXD3
Human Protein AtlasENSG00000203943
Peptide AtlasQ5VXD3
HPRD17302
IPIIPI00182967   IPI00646930   IPI00604752   IPI00647737   IPI00924614   
Protein Interaction databases
DIP (DOE-UCLA)Q5VXD3
IntAct (EBI)Q5VXD3
FunCoupENSG00000203943
BioGRIDSAMD13
STRING (EMBL)SAMD13
ZODIACSAMD13
Ontologies - Pathways
QuickGOQ5VXD3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSAMD13
Atlas of Cancer Signalling NetworkSAMD13
Wikipedia pathwaysSAMD13
Orthology - Evolution
OrthoDB148418
GeneTree (enSembl)ENSG00000203943
Phylogenetic Trees/Animal Genes : TreeFamSAMD13
HOVERGENQ5VXD3
HOGENOMQ5VXD3
Homologs : HomoloGeneSAMD13
Homology/Alignments : Family Browser (UCSC)SAMD13
Gene fusions - Rearrangements
Fusion : MitelmanTTLL7/SAMD13 [1p31.1/1p31.1]  [t(1;1)(p31;p31)]  
Fusion: TCGATTLL7 1p31.1 SAMD13 1p31.1 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD13
dbVarSAMD13
ClinVarSAMD13
1000_GenomesSAMD13 
Exome Variant ServerSAMD13
ExAC (Exome Aggregation Consortium)SAMD13 (select the gene name)
Genetic variants : HAPMAP148418
Genomic Variants (DGV)SAMD13 [DGVbeta]
DECIPHERSAMD13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAMD13 
Mutations
ICGC Data PortalSAMD13 
TCGA Data PortalSAMD13 
Broad Tumor PortalSAMD13
OASIS PortalSAMD13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAMD13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAMD13
DgiDB (Drug Gene Interaction Database)SAMD13
DoCM (Curated mutations)SAMD13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAMD13 (select a term)
intoGenSAMD13
Cancer3DSAMD13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSAMD13
Genetic Testing Registry SAMD13
NextProtQ5VXD3 [Medical]
TSGene148418
GENETestsSAMD13
Target ValidationSAMD13
Huge Navigator SAMD13 [HugePedia]
snp3D : Map Gene to Disease148418
BioCentury BCIQSAMD13
ClinGenSAMD13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148418
Chemical/Pharm GKB GenePA142670952
Clinical trialSAMD13
Miscellaneous
canSAR (ICR)SAMD13 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD13
EVEXSAMD13
GoPubMedSAMD13
iHOPSAMD13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:54:21 CEST 2017

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