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SAMD13 (sterile alpha motif domain containing 13)

Identity

Other namesRP11-376N17.1
HGNC (Hugo) SAMD13
LocusID (NCBI) 148418
Location 1p31.1
Location_base_pair Starts at 84764049 and ends at 84816481 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SAMD13   24582
Entrez_Gene (NCBI)SAMD13  148418  sterile alpha motif domain containing 13
Cards
GeneCards (Weizmann)SAMD13
Ensembl (Hinxton)ENSG00000203943 [Gene_View]  chr1:84764049-84816481 [Contig_View]  SAMD13 [Vega]
AceView (NCBI)SAMD13
Genatlas (Paris)SAMD13
SOURCE (Stanford)NM_001010971 NM_001134663 NM_001134664
Genomic and cartography
GoldenPath (UCSC)SAMD13  -  1p31.1   chr1:84764049-84816481 +  1p31.1   [Description]    (hg19-Feb_2009)
EnsemblSAMD13 - 1p31.1 [CytoView]
Mapping of homologs : NCBISAMD13 [Mapview]
Gene and transcription
Genbank (Entrez)AK056937 BC037973 BF000472 DB459148
RefSeq transcript (SRS)NM_001010971 NM_001134663 NM_001134664
RefSeq transcript (Entrez)NM_001010971 NM_001134663 NM_001134664
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838589 NW_004077990
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838589 NW_004077990
Consensus coding sequences : CCDS (NCBI)SAMD13
Cluster EST : UnigeneHs.591445 [ SRS ] Hs.591445 [ NCBI ]
CGAP (NCI)Hs.591445
Alternative Splicing : Fast-db (Paris)GSHG0000661
Alternative Splicing GalleryENSG00000203943
Gene ExpressionSAMD13 [ NCBI-GEO ]   SAMD13 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VXD3 (SRS) Q5VXD3 (Uniprot)
NextProtQ5VXD3
With graphics : InterProQ5VXD3
Splice isoforms : SwissVarQ5VXD3(Swissvar)
Domaine pattern : Prosite (SRS)SAM_DOMAIN (PS50105)   
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (SRS)SAM    SAM/pointed    SAM_type1   
Domains : Interpro (EBI)SAM    SAM/pointed    SAM_type1   
Related proteins : CluSTrQ5VXD3
Domain families : Pfam (SRS)SAM_1 (PF00536)   
Domain families : Pfam (Sanger)SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00536   
Domain families : Smart (EMBL)SAM (SM00454)  
DMDM148418
Blocks (Seattle)Q5VXD3
Human Protein AtlasENSG00000203943
HPRD17302
IPIIPI00182967   IPI00646930   IPI00604752   IPI00647737   IPI00924614   
Protein Interaction databases
DIP (DOE-UCLA)Q5VXD3
IntAct (EBI)Q5VXD3
FunCoupENSG00000203943
REACTOMESAMD13
Protein Interaction Database148418
BioGRIDSAMD13
InParanoidQ5VXD3
Interologous Interaction database Q5VXD3
IntegromeDBSAMD13
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SAMD13
SNP (GeneSNP Utah)SAMD13
SNP : HGBaseSAMD13
Genetic variants : HAPMAPSAMD13
Somatic Mutations in Cancer : COSMICSAMD13 
CONAN: Copy Number AnalysisSAMD13 
Mutations and Diseases : HGMDSAMD13
OMIM
GENETests
Disease Genetic AssociationSAMD13
Huge Navigator SAMD13 [HugePedia]  SAMD13 [HugeCancerGEM]
Genomic VariantsSAMD13  SAMD13 [DGVbeta]
snp3D : Map Gene to Disease148418
General knowledge
Homologs : HomoloGeneSAMD13
Homology/Alignments : Family Browser (UCSC)SAMD13
Phylogenetic Trees/Animal Genes : TreeFamSAMD13
Chemical/Protein Interactions : CTD148418
Chemical/Pharm GKB GenePA142670952
Clinical trialSAMD13
Cancer Resource (Charite)ENSG00000203943
Ontology : AmiGO
Ontology : EGO-EBI
Other databases
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
PubGeneSAMD13
iHOPSAMD13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:31:19 CEST 2013
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