Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SAMD14 (sterile alpha motif domain containing 14)

Identity

Alias_symbol (synonym)FLJ36890
Other alias-
HGNC (Hugo) SAMD14
LocusID (NCBI) 201191
Atlas_Id 72965
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 50111309 and ends at 50129882 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		SAMD14 (17q21.33) / LARP1 (5q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SAMD14   27312
Cards
Entrez_Gene (NCBI)SAMD14  201191  sterile alpha motif domain containing 14
Aliases
GeneCards (Weizmann)SAMD14
Ensembl hg19 (Hinxton)ENSG00000167100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167100 [Gene_View]  chr17:50111309-50129882 [Contig_View]  SAMD14 [Vega]
ICGC DataPortalENSG00000167100
TCGA cBioPortalSAMD14
AceView (NCBI)SAMD14
Genatlas (Paris)SAMD14
WikiGenes201191
SOURCE (Princeton)SAMD14
Genetics Home Reference (NIH)SAMD14
Genomic and cartography
GoldenPath hg38 (UCSC)SAMD14  -     chr17:50111309-50129882 -  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAMD14  -     17q21.33   [Description]    (hg19-Feb_2009)
EnsemblSAMD14 - 17q21.33 [CytoView hg19]  SAMD14 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBISAMD14 [Mapview hg19]  SAMD14 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035306 AK054843 AK094209 AK095809 AK225767
RefSeq transcript (Entrez)NM_001257359 NM_174920
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAMD14
Cluster EST : UnigeneHs.567769 [ NCBI ]
CGAP (NCI)Hs.567769
Alternative Splicing GalleryENSG00000167100
Gene ExpressionSAMD14 [ NCBI-GEO ]   SAMD14 [ EBI - ARRAY_EXPRESS ]   SAMD14 [ SEEK ]   SAMD14 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201191
GTEX Portal (Tissue expression)SAMD14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZD0
Splice isoforms : SwissVarQ8IZD0
PhosPhoSitePlusQ8IZD0
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)SAM    SAM/pointed   
Domain families : Pfam (Sanger)SAM_2 (PF07647)   
Domain families : Pfam (NCBI)pfam07647   
Domain families : Smart (EMBL)SAM (SM00454)  
Conserved Domain (NCBI)SAMD14
DMDM Disease mutations201191
Blocks (Seattle)SAMD14
SuperfamilyQ8IZD0
Human Protein AtlasENSG00000167100
Peptide AtlasQ8IZD0
HPRD14127
IPIIPI00333788   IPI00217977   IPI00968111   IPI00965587   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZD0
IntAct (EBI)Q8IZD0
FunCoupENSG00000167100
BioGRIDSAMD14
STRING (EMBL)SAMD14
ZODIACSAMD14
Ontologies - Pathways
QuickGOQ8IZD0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSAMD14
Atlas of Cancer Signalling NetworkSAMD14
Wikipedia pathwaysSAMD14
Orthology - Evolution
OrthoDB201191
GeneTree (enSembl)ENSG00000167100
Phylogenetic Trees/Animal Genes : TreeFamSAMD14
HOVERGENQ8IZD0
HOGENOMQ8IZD0
Homologs : HomoloGeneSAMD14
Homology/Alignments : Family Browser (UCSC)SAMD14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD14
dbVarSAMD14
ClinVarSAMD14
1000_GenomesSAMD14 
Exome Variant ServerSAMD14
ExAC (Exome Aggregation Consortium)SAMD14 (select the gene name)
Genetic variants : HAPMAP201191
Genomic Variants (DGV)SAMD14 [DGVbeta]
DECIPHERSAMD14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAMD14 
Mutations
ICGC Data PortalSAMD14 
TCGA Data PortalSAMD14 
Broad Tumor PortalSAMD14
OASIS PortalSAMD14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAMD14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAMD14
DgiDB (Drug Gene Interaction Database)SAMD14
DoCM (Curated mutations)SAMD14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAMD14 (select a term)
intoGenSAMD14
Cancer3DSAMD14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSAMD14
Genetic Testing Registry SAMD14
NextProtQ8IZD0 [Medical]
TSGene201191
GENETestsSAMD14
Target ValidationSAMD14
Huge Navigator SAMD14 [HugePedia]
snp3D : Map Gene to Disease201191
BioCentury BCIQSAMD14
ClinGenSAMD14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201191
Chemical/Pharm GKB GenePA142670953
Clinical trialSAMD14
Miscellaneous
canSAR (ICR)SAMD14 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD14
EVEXSAMD14
GoPubMedSAMD14
iHOPSAMD14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:49 CEST 2017
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