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SAMD15 (sterile alpha motif domain containing 15)

Identity

Alias_namesFAM15A
C14orf174
family with sequence similarity 15, member A
chromosome 14 open reading frame 174
Alias_symbol (synonym)FLJ35963
Other alias
HGNC (Hugo) SAMD15
LocusID (NCBI) 161394
Atlas_Id 72966
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 77843762 and ends at 77857587 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAMD15   18631
Cards
Entrez_Gene (NCBI)SAMD15  161394  sterile alpha motif domain containing 15
AliasesC14orf174; FAM15A
GeneCards (Weizmann)SAMD15
Ensembl hg19 (Hinxton) [Gene_View]  chr14:77843762-77857587 [Contig_View]  SAMD15 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:77843762-77857587 [Contig_View]  SAMD15 [Vega]
TCGA cBioPortalSAMD15
AceView (NCBI)SAMD15
Genatlas (Paris)SAMD15
WikiGenes161394
SOURCE (Princeton)SAMD15
Genetics Home Reference (NIH)SAMD15
Genomic and cartography
GoldenPath hg19 (UCSC)SAMD15  -     chr14:77843762-77857587 +  14q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SAMD15  -     14q24.3   [Description]    (hg38-Dec_2013)
EnsemblSAMD15 - 14q24.3 [CytoView hg19]  SAMD15 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBISAMD15 [Mapview hg19]  SAMD15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093282 AK292571 BC104834 BC104836
RefSeq transcript (Entrez)NM_001010860
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)SAMD15
Cluster EST : UnigeneHs.421961 [ NCBI ]
CGAP (NCI)Hs.421961
Gene ExpressionSAMD15 [ NCBI-GEO ]   SAMD15 [ EBI - ARRAY_EXPRESS ]   SAMD15 [ SEEK ]   SAMD15 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161394
GTEX Portal (Tissue expression)SAMD15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1V8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1V8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1V8
Splice isoforms : SwissVarQ9P1V8
PhosPhoSitePlusQ9P1V8
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)SAM    SAM/pointed    SAM_2   
Domain families : Pfam (Sanger)SAM_2 (PF07647)   
Domain families : Pfam (NCBI)pfam07647   
Domain families : Smart (EMBL)SAM (SM00454)  
Conserved Domain (NCBI)SAMD15
DMDM Disease mutations161394
Blocks (Seattle)SAMD15
SuperfamilyQ9P1V8
Peptide AtlasQ9P1V8
HPRD16618
IPIIPI00008191   IPI00829776   IPI01024844   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1V8
IntAct (EBI)Q9P1V8
BioGRIDSAMD15
STRING (EMBL)SAMD15
ZODIACSAMD15
Ontologies - Pathways
QuickGOQ9P1V8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSAMD15
Atlas of Cancer Signalling NetworkSAMD15
Wikipedia pathwaysSAMD15
Orthology - Evolution
OrthoDB161394
Phylogenetic Trees/Animal Genes : TreeFamSAMD15
HOVERGENQ9P1V8
HOGENOMQ9P1V8
Homologs : HomoloGeneSAMD15
Homology/Alignments : Family Browser (UCSC)SAMD15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD15
dbVarSAMD15
ClinVarSAMD15
1000_GenomesSAMD15 
Exome Variant ServerSAMD15
ExAC (Exome Aggregation Consortium)SAMD15 (select the gene name)
Genetic variants : HAPMAP161394
Genomic Variants (DGV)SAMD15 [DGVbeta]
DECIPHER (Syndromes)14:77843762-77857587  
CONAN: Copy Number AnalysisSAMD15 
Mutations
ICGC Data PortalSAMD15 
TCGA Data PortalSAMD15 
Broad Tumor PortalSAMD15
OASIS PortalSAMD15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAMD15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAMD15
DgiDB (Drug Gene Interaction Database)SAMD15
DoCM (Curated mutations)SAMD15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAMD15 (select a term)
intoGenSAMD15
Cancer3DSAMD15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSAMD15
Genetic Testing Registry SAMD15
NextProtQ9P1V8 [Medical]
TSGene161394
GENETestsSAMD15
Huge Navigator SAMD15 [HugePedia]
snp3D : Map Gene to Disease161394
BioCentury BCIQSAMD15
ClinGenSAMD15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161394
Chemical/Pharm GKB GenePA134903169
Clinical trialSAMD15
Miscellaneous
canSAR (ICR)SAMD15 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD15
EVEXSAMD15
GoPubMedSAMD15
iHOPSAMD15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:15 CET 2017

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