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SAMD4A (sterile alpha motif domain containing 4A)

Identity

Alias_namesSAMD4
sterile alpha motif domain containing 4
Alias_symbol (synonym)KIAA1053
DKFZP434H0350
Smaug
SMG
SMGA
hSmaug1
Other aliasSMAUG
SMAUG1
HGNC (Hugo) SAMD4A
LocusID (NCBI) 23034
Atlas_Id 72968
Location 14q22.2  [Link to chromosome band 14q22]
Location_base_pair Starts at 54567612 and ends at 54793315 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AKNAD1 (1p13.3) / SAMD4A (14q22.2)DSP (6p24.3) / SAMD4A (14q22.2)SAMD4A (14q22.2) / IGFBP5 (2q35)
SAMD4A (14q22.2) / LRBA (4q31.3)SAMD4A (14q22.2) / SAMD4A (14q22.2)VRK1 (14q32.2) / SAMD4A (14q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAMD4A   23023
Cards
Entrez_Gene (NCBI)SAMD4A  23034  sterile alpha motif domain containing 4A
AliasesSAMD4; SMAUG; SMAUG1; SMG; 
SMGA
GeneCards (Weizmann)SAMD4A
Ensembl hg19 (Hinxton)ENSG00000020577 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000020577 [Gene_View]  chr14:54567612-54793315 [Contig_View]  SAMD4A [Vega]
ICGC DataPortalENSG00000020577
TCGA cBioPortalSAMD4A
AceView (NCBI)SAMD4A
Genatlas (Paris)SAMD4A
WikiGenes23034
SOURCE (Princeton)SAMD4A
Genetics Home Reference (NIH)SAMD4A
Genomic and cartography
GoldenPath hg38 (UCSC)SAMD4A  -     chr14:54567612-54793315 +  14q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAMD4A  -     14q22.2   [Description]    (hg19-Feb_2009)
EnsemblSAMD4A - 14q22.2 [CytoView hg19]  SAMD4A - 14q22.2 [CytoView hg38]
Mapping of homologs : NCBISAMD4A [Mapview hg19]  SAMD4A [Mapview hg38]
OMIM610747   
Gene and transcription
Genbank (Entrez)AB028976 AF429970 AK024652 AK025923 AK074716
RefSeq transcript (Entrez)NM_001161576 NM_001161577 NM_015589
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAMD4A
Cluster EST : UnigeneHs.733324 [ NCBI ]
CGAP (NCI)Hs.733324
Alternative Splicing GalleryENSG00000020577
Gene ExpressionSAMD4A [ NCBI-GEO ]   SAMD4A [ EBI - ARRAY_EXPRESS ]   SAMD4A [ SEEK ]   SAMD4A [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD4A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23034
GTEX Portal (Tissue expression)SAMD4A
Human Protein AtlasENSG00000020577-SAMD4A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPU9
Splice isoforms : SwissVarQ9UPU9
PhosPhoSitePlusQ9UPU9
Domains : Interpro (EBI)PHAT_dom    SAM    SAM/pointed   
Domain families : Pfam (Sanger)SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00536   
Domain families : Smart (EMBL)SAM (SM00454)  
Conserved Domain (NCBI)SAMD4A
DMDM Disease mutations23034
Blocks (Seattle)SAMD4A
SuperfamilyQ9UPU9
Human Protein Atlas [tissue]ENSG00000020577-SAMD4A [tissue]
Peptide AtlasQ9UPU9
HPRD10209
IPIIPI00744767   IPI00010390   IPI00103197   IPI01025414   IPI00942403   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPU9
IntAct (EBI)Q9UPU9
FunCoupENSG00000020577
BioGRIDSAMD4A
STRING (EMBL)SAMD4A
ZODIACSAMD4A
Ontologies - Pathways
QuickGOQ9UPU9
Ontology : AmiGOnuclear-transcribed mRNA poly(A) tail shortening  P-body  fibrillar center  RNA binding  mRNA binding  protein binding  cytosol  regulation of transcription, DNA-templated  negative regulation of translation  cell junction  translation repressor activity  dendrite  regulation of mRNA stability  synapse  positive regulation of translation  
Ontology : EGO-EBInuclear-transcribed mRNA poly(A) tail shortening  P-body  fibrillar center  RNA binding  mRNA binding  protein binding  cytosol  regulation of transcription, DNA-templated  negative regulation of translation  cell junction  translation repressor activity  dendrite  regulation of mRNA stability  synapse  positive regulation of translation  
NDEx NetworkSAMD4A
Atlas of Cancer Signalling NetworkSAMD4A
Wikipedia pathwaysSAMD4A
Orthology - Evolution
OrthoDB23034
GeneTree (enSembl)ENSG00000020577
Phylogenetic Trees/Animal Genes : TreeFamSAMD4A
HOVERGENQ9UPU9
HOGENOMQ9UPU9
Homologs : HomoloGeneSAMD4A
Homology/Alignments : Family Browser (UCSC)SAMD4A
Gene fusions - Rearrangements
Tumor Fusion PortalSAMD4A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD4A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD4A
dbVarSAMD4A
ClinVarSAMD4A
1000_GenomesSAMD4A 
Exome Variant ServerSAMD4A
ExAC (Exome Aggregation Consortium)ENSG00000020577
GNOMAD BrowserENSG00000020577
Genetic variants : HAPMAP23034
Genomic Variants (DGV)SAMD4A [DGVbeta]
DECIPHERSAMD4A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAMD4A 
Mutations
ICGC Data PortalSAMD4A 
TCGA Data PortalSAMD4A 
Broad Tumor PortalSAMD4A
OASIS PortalSAMD4A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD4A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAMD4A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAMD4A
DgiDB (Drug Gene Interaction Database)SAMD4A
DoCM (Curated mutations)SAMD4A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAMD4A (select a term)
intoGenSAMD4A
Cancer3DSAMD4A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610747   
Orphanet
DisGeNETSAMD4A
MedgenSAMD4A
Genetic Testing Registry SAMD4A
NextProtQ9UPU9 [Medical]
TSGene23034
GENETestsSAMD4A
Target ValidationSAMD4A
Huge Navigator SAMD4A [HugePedia]
snp3D : Map Gene to Disease23034
BioCentury BCIQSAMD4A
ClinGenSAMD4A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23034
Chemical/Pharm GKB GenePA128394596
Clinical trialSAMD4A
Miscellaneous
canSAR (ICR)SAMD4A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD4A
EVEXSAMD4A
GoPubMedSAMD4A
iHOPSAMD4A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:30:25 CET 2017

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