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SAMD5 (sterile alpha motif domain containing 5)

Identity

Other aliasdJ875H10.1
HGNC (Hugo) SAMD5
LocusID (NCBI) 389432
Atlas_Id 57565
Location 6q24.3  [Link to chromosome band 6q24]
Location_base_pair Starts at 147508692 and ends at 147570021 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SAMD5 (6q24.3) / SASH1 (6q24.3)SASH1 (6q24.3) / SAMD5 (6q24.3)SCAF8 (6q25.2) / SAMD5 (6q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  SASH1/SAMD5 (6q24)
t(6;6)(q24;q25) SCAF8/SAMD5


External links

Nomenclature
HGNC (Hugo)SAMD5   21180
Cards
Entrez_Gene (NCBI)SAMD5  389432  sterile alpha motif domain containing 5
AliasesdJ875H10.1
GeneCards (Weizmann)SAMD5
Ensembl hg19 (Hinxton)ENSG00000203727 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203727 [Gene_View]  ENSG00000203727 [Sequence]  chr6:147508692-147570021 [Contig_View]  SAMD5 [Vega]
ICGC DataPortalENSG00000203727
TCGA cBioPortalSAMD5
AceView (NCBI)SAMD5
Genatlas (Paris)SAMD5
WikiGenes389432
SOURCE (Princeton)SAMD5
Genetics Home Reference (NIH)SAMD5
Genomic and cartography
GoldenPath hg38 (UCSC)SAMD5  -     chr6:147508692-147570021 +  6q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAMD5  -     6q24.3   [Description]    (hg19-Feb_2009)
EnsemblSAMD5 - 6q24.3 [CytoView hg19]  SAMD5 - 6q24.3 [CytoView hg38]
Mapping of homologs : NCBISAMD5 [Mapview hg19]  SAMD5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC020896 BX642659 CB988162
RefSeq transcript (Entrez)NM_001030060
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAMD5
Cluster EST : UnigeneHs.567973 [ NCBI ]
CGAP (NCI)Hs.567973
Alternative Splicing GalleryENSG00000203727
Gene ExpressionSAMD5 [ NCBI-GEO ]   SAMD5 [ EBI - ARRAY_EXPRESS ]   SAMD5 [ SEEK ]   SAMD5 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389432
GTEX Portal (Tissue expression)SAMD5
Human Protein AtlasENSG00000203727-SAMD5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TGI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TGI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TGI4
Splice isoforms : SwissVarQ5TGI4
PhosPhoSitePlusQ5TGI4
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)SAM    SAM/pointed_sf   
Domain families : Pfam (Sanger)SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00536   
Domain families : Smart (EMBL)SAM (SM00454)  
Conserved Domain (NCBI)SAMD5
DMDM Disease mutations389432
Blocks (Seattle)SAMD5
SuperfamilyQ5TGI4
Human Protein Atlas [tissue]ENSG00000203727-SAMD5 [tissue]
Peptide AtlasQ5TGI4
IPIIPI00374317   
Protein Interaction databases
DIP (DOE-UCLA)Q5TGI4
IntAct (EBI)Q5TGI4
FunCoupENSG00000203727
BioGRIDSAMD5
STRING (EMBL)SAMD5
ZODIACSAMD5
Ontologies - Pathways
QuickGOQ5TGI4
Ontology : AmiGOmitogen-activated protein kinase kinase kinase binding  positive regulation of JUN kinase activity  positive regulation of NIK/NF-kappaB signaling  
Ontology : EGO-EBImitogen-activated protein kinase kinase kinase binding  positive regulation of JUN kinase activity  positive regulation of NIK/NF-kappaB signaling  
NDEx NetworkSAMD5
Atlas of Cancer Signalling NetworkSAMD5
Wikipedia pathwaysSAMD5
Orthology - Evolution
OrthoDB389432
GeneTree (enSembl)ENSG00000203727
Phylogenetic Trees/Animal Genes : TreeFamSAMD5
HOVERGENQ5TGI4
HOGENOMQ5TGI4
Homologs : HomoloGeneSAMD5
Homology/Alignments : Family Browser (UCSC)SAMD5
Gene fusions - Rearrangements
Fusion : QuiverSAMD5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD5
dbVarSAMD5
ClinVarSAMD5
1000_GenomesSAMD5 
Exome Variant ServerSAMD5
ExAC (Exome Aggregation Consortium)ENSG00000203727
GNOMAD BrowserENSG00000203727
Varsome BrowserSAMD5
Genetic variants : HAPMAP389432
Genomic Variants (DGV)SAMD5 [DGVbeta]
DECIPHERSAMD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAMD5 
Mutations
ICGC Data PortalSAMD5 
TCGA Data PortalSAMD5 
Broad Tumor PortalSAMD5
OASIS PortalSAMD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAMD5
BioMutasearch SAMD5
DgiDB (Drug Gene Interaction Database)SAMD5
DoCM (Curated mutations)SAMD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAMD5 (select a term)
intoGenSAMD5
Cancer3DSAMD5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSAMD5
MedgenSAMD5
Genetic Testing Registry SAMD5
NextProtQ5TGI4 [Medical]
TSGene389432
GENETestsSAMD5
Target ValidationSAMD5
Huge Navigator SAMD5 [HugePedia]
snp3D : Map Gene to Disease389432
BioCentury BCIQSAMD5
ClinGenSAMD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389432
Chemical/Pharm GKB GenePA134888862
Clinical trialSAMD5
Miscellaneous
canSAR (ICR)SAMD5 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD5
EVEXSAMD5
GoPubMedSAMD5
iHOPSAMD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:37:10 CET 2018

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