Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SAMD7 (sterile alpha motif domain containing 7)

Identity

Alias_symbol (synonym)DKFZp686E1583
Other alias-
HGNC (Hugo) SAMD7
LocusID (NCBI) 344658
Atlas_Id 72970
Location 3q26.2  [Link to chromosome band 3q26]
Location_base_pair Starts at 169911572 and ends at 169939168 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAMD7   25394
Cards
Entrez_Gene (NCBI)SAMD7  344658  sterile alpha motif domain containing 7
Aliases
GeneCards (Weizmann)SAMD7
Ensembl hg19 (Hinxton)ENSG00000187033 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187033 [Gene_View]  chr3:169911572-169939168 [Contig_View]  SAMD7 [Vega]
ICGC DataPortalENSG00000187033
TCGA cBioPortalSAMD7
AceView (NCBI)SAMD7
Genatlas (Paris)SAMD7
WikiGenes344658
SOURCE (Princeton)SAMD7
Genetics Home Reference (NIH)SAMD7
Genomic and cartography
GoldenPath hg38 (UCSC)SAMD7  -     chr3:169911572-169939168 +  3q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAMD7  -     3q26.2   [Description]    (hg19-Feb_2009)
EnsemblSAMD7 - 3q26.2 [CytoView hg19]  SAMD7 - 3q26.2 [CytoView hg38]
Mapping of homologs : NCBISAMD7 [Mapview hg19]  SAMD7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL711948 BC117339 BC143909 BX537903 BX648534
RefSeq transcript (Entrez)NM_001304366 NM_182610
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAMD7
Cluster EST : UnigeneHs.439922 [ NCBI ]
CGAP (NCI)Hs.439922
Alternative Splicing GalleryENSG00000187033
Gene ExpressionSAMD7 [ NCBI-GEO ]   SAMD7 [ EBI - ARRAY_EXPRESS ]   SAMD7 [ SEEK ]   SAMD7 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344658
GTEX Portal (Tissue expression)SAMD7
Human Protein AtlasENSG00000187033-SAMD7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3H4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3H4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3H4
Splice isoforms : SwissVarQ7Z3H4
PhosPhoSitePlusQ7Z3H4
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)SAM    SAM/pointed   
Domain families : Pfam (Sanger)SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00536   
Domain families : Smart (EMBL)SAM (SM00454)  
Conserved Domain (NCBI)SAMD7
DMDM Disease mutations344658
Blocks (Seattle)SAMD7
SuperfamilyQ7Z3H4
Human Protein Atlas [tissue]ENSG00000187033-SAMD7 [tissue]
Peptide AtlasQ7Z3H4
HPRD18013
IPIIPI00375770   IPI00946438   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3H4
IntAct (EBI)Q7Z3H4
FunCoupENSG00000187033
BioGRIDSAMD7
STRING (EMBL)SAMD7
ZODIACSAMD7
Ontologies - Pathways
QuickGOQ7Z3H4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSAMD7
Atlas of Cancer Signalling NetworkSAMD7
Wikipedia pathwaysSAMD7
Orthology - Evolution
OrthoDB344658
GeneTree (enSembl)ENSG00000187033
Phylogenetic Trees/Animal Genes : TreeFamSAMD7
HOVERGENQ7Z3H4
HOGENOMQ7Z3H4
Homologs : HomoloGeneSAMD7
Homology/Alignments : Family Browser (UCSC)SAMD7
Gene fusions - Rearrangements
Tumor Fusion PortalSAMD7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD7
dbVarSAMD7
ClinVarSAMD7
1000_GenomesSAMD7 
Exome Variant ServerSAMD7
ExAC (Exome Aggregation Consortium)ENSG00000187033
GNOMAD BrowserENSG00000187033
Genetic variants : HAPMAP344658
Genomic Variants (DGV)SAMD7 [DGVbeta]
DECIPHERSAMD7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAMD7 
Mutations
ICGC Data PortalSAMD7 
TCGA Data PortalSAMD7 
Broad Tumor PortalSAMD7
OASIS PortalSAMD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAMD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAMD7
DgiDB (Drug Gene Interaction Database)SAMD7
DoCM (Curated mutations)SAMD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAMD7 (select a term)
intoGenSAMD7
Cancer3DSAMD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSAMD7
MedgenSAMD7
Genetic Testing Registry SAMD7
NextProtQ7Z3H4 [Medical]
TSGene344658
GENETestsSAMD7
Target ValidationSAMD7
Huge Navigator SAMD7 [HugePedia]
snp3D : Map Gene to Disease344658
BioCentury BCIQSAMD7
ClinGenSAMD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344658
Chemical/Pharm GKB GenePA134861212
Clinical trialSAMD7
Miscellaneous
canSAR (ICR)SAMD7 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD7
EVEXSAMD7
GoPubMedSAMD7
iHOPSAMD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:08:55 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.