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SAMD9 (sterile alpha motif domain containing 9)

Identity

Other namesC7orf5
DRIF1
NFTC
OEF1
OEF2
HGNC (Hugo) SAMD9
LocusID (NCBI) 54809
Location 7q21.2
Location_base_pair Starts at 92728826 and ends at 92747336 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SAMD9   1348
Entrez_Gene (NCBI)SAMD9  54809  sterile alpha motif domain containing 9
Cards
GeneCards (Weizmann)SAMD9
Ensembl (Hinxton)ENSG00000205413 [Gene_View]  chr7:92728826-92747336 [Contig_View]  SAMD9 [Vega]
AceView (NCBI)SAMD9
Genatlas (Paris)SAMD9
SOURCE (Stanford)NM_001193307 NM_017654
Genomic and cartography
GoldenPath (UCSC)SAMD9  -  7q21.2   chr7:92728826-92747336 -  7q21.2   [Description]    (hg19-Feb_2009)
EnsemblSAMD9 - 7q21.2 [CytoView]
Mapping of homologs : NCBISAMD9 [Mapview]
OMIM610455   610456   
Gene and transcription
Genbank (Entrez)AA628487 AB095925 AF445355 AF453311 AK000080
RefSeq transcript (SRS)NM_001193307 NM_017654
RefSeq transcript (Entrez)NM_001193307 NM_017654
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NG_023419 NT_007933 NT_079595 NW_001839064 NW_004078032
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NG_023419 NT_007933 NT_079595 NW_001839064 NW_004078032
Consensus coding sequences : CCDS (NCBI)SAMD9
Cluster EST : UnigeneHs.65641 [ SRS ] Hs.65641 [ NCBI ]
CGAP (NCI)Hs.65641
Alternative Splicing : Fast-db (Paris)GSHG0028354
Alternative Splicing GalleryENSG00000205413
Gene ExpressionSAMD9 [ NCBI-GEO ]   SAMD9 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5K651 (SRS) Q5K651 (Uniprot)
NextProtQ5K651
With graphics : InterProQ5K651
Splice isoforms : SwissVarQ5K651(Swissvar)
Domaine pattern : Prosite (SRS)SAM_DOMAIN (PS50105)   
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (SRS)SAM    SAM/pointed    SAM_type1   
Domains : Interpro (EBI)SAM    SAM/pointed    SAM_type1   
Related proteins : CluSTrQ5K651
Domain families : Pfam (SRS)SAM_1 (PF00536)   
Domain families : Pfam (Sanger)SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00536   
Domain families : Smart (EMBL)SAM (SM00454)  
DMDM54809
Blocks (Seattle)Q5K651
Human Protein AtlasENSG00000205413
HPRD11531
IPIIPI00217018   IPI00926612   
Protein Interaction databases
DIP (DOE-UCLA)Q5K651
IntAct (EBI)Q5K651
FunCoupENSG00000205413
REACTOMESAMD9
Protein Interaction Database54809
BioGRIDSAMD9
InParanoidQ5K651
Interologous Interaction database Q5K651
IntegromeDBSAMD9
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SAMD9
SNP (GeneSNP Utah)SAMD9
SNP : HGBaseSAMD9
Genetic variants : HAPMAPSAMD9
Somatic Mutations in Cancer : COSMICSAMD9 
CONAN: Copy Number AnalysisSAMD9 
Mutations and Diseases : HGMDSAMD9
OMIM610455    610456   
GENETests610455    610456   
Disease Genetic AssociationSAMD9
Huge Navigator SAMD9 [HugePedia]  SAMD9 [HugeCancerGEM]
Genomic VariantsSAMD9  SAMD9 [DGVbeta]
snp3D : Map Gene to Disease54809
General knowledge
Homologs : HomoloGeneSAMD9
Homology/Alignments : Family Browser (UCSC)SAMD9
Phylogenetic Trees/Animal Genes : TreeFamSAMD9
Chemical/Protein Interactions : CTD54809
Chemical/Pharm GKB GenePA25948
Clinical trialSAMD9
Cancer Resource (Charite)ENSG00000205413
Ontology : AmiGOcytoplasm  intracellular membrane-bounded organelle  
Ontology : EGO-EBIcytoplasm  intracellular membrane-bounded organelle  
Other databases
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
PubGeneSAMD9
iHOPSAMD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:43:54 CEST 2013
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