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SAMD9 (sterile alpha motif domain containing 9)

Identity

Alias_namesC7orf5
chromosome 7 open reading frame 5
Alias_symbol (synonym)KIAA2004
FLJ20073
Other aliasDRIF1
NFTC
OEF1
OEF2
HGNC (Hugo) SAMD9
LocusID (NCBI) 54809
Atlas_Id 51426
Location 7q21.2  [Link to chromosome band 7q21]
Location_base_pair Starts at 92728826 and ends at 92747336 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SAMD9 (7q21.2) / GCLM (1p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAMD9   1348
Cards
Entrez_Gene (NCBI)SAMD9  54809  sterile alpha motif domain containing 9
AliasesC7orf5; DRIF1; NFTC; OEF1; 
OEF2
GeneCards (Weizmann)SAMD9
Ensembl hg19 (Hinxton)ENSG00000205413 [Gene_View]  chr7:92728826-92747336 [Contig_View]  SAMD9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205413 [Gene_View]  chr7:92728826-92747336 [Contig_View]  SAMD9 [Vega]
ICGC DataPortalENSG00000205413
TCGA cBioPortalSAMD9
AceView (NCBI)SAMD9
Genatlas (Paris)SAMD9
WikiGenes54809
SOURCE (Princeton)SAMD9
Genetics Home Reference (NIH)SAMD9
Genomic and cartography
GoldenPath hg19 (UCSC)SAMD9  -     chr7:92728826-92747336 -  7q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SAMD9  -     7q21.2   [Description]    (hg38-Dec_2013)
EnsemblSAMD9 - 7q21.2 [CytoView hg19]  SAMD9 - 7q21.2 [CytoView hg38]
Mapping of homologs : NCBISAMD9 [Mapview hg19]  SAMD9 [Mapview hg38]
OMIM610455   610456   
Gene and transcription
Genbank (Entrez)AA628487 AB095925 AF445355 AF453311 AK000080
RefSeq transcript (Entrez)NM_001193307 NM_017654
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_023419 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)SAMD9
Cluster EST : UnigeneHs.65641 [ NCBI ]
CGAP (NCI)Hs.65641
Alternative Splicing GalleryENSG00000205413
Gene ExpressionSAMD9 [ NCBI-GEO ]   SAMD9 [ EBI - ARRAY_EXPRESS ]   SAMD9 [ SEEK ]   SAMD9 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54809
GTEX Portal (Tissue expression)SAMD9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5K651   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5K651  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5K651
Splice isoforms : SwissVarQ5K651
PhosPhoSitePlusQ5K651
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)P-loop_NTPase    SAM    SAM/pointed   
Domain families : Pfam (Sanger)SAM_2 (PF07647)   
Domain families : Pfam (NCBI)pfam07647   
Domain families : Smart (EMBL)SAM (SM00454)  
Conserved Domain (NCBI)SAMD9
DMDM Disease mutations54809
Blocks (Seattle)SAMD9
SuperfamilyQ5K651
Human Protein AtlasENSG00000205413
Peptide AtlasQ5K651
HPRD11531
IPIIPI00217018   IPI00926612   
Protein Interaction databases
DIP (DOE-UCLA)Q5K651
IntAct (EBI)Q5K651
FunCoupENSG00000205413
BioGRIDSAMD9
STRING (EMBL)SAMD9
ZODIACSAMD9
Ontologies - Pathways
QuickGOQ5K651
Ontology : AmiGOprotein binding  cytoplasm  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  cytoplasm  intracellular membrane-bounded organelle  
NDEx NetworkSAMD9
Atlas of Cancer Signalling NetworkSAMD9
Wikipedia pathwaysSAMD9
Orthology - Evolution
OrthoDB54809
GeneTree (enSembl)ENSG00000205413
Phylogenetic Trees/Animal Genes : TreeFamSAMD9
HOVERGENQ5K651
HOGENOMQ5K651
Homologs : HomoloGeneSAMD9
Homology/Alignments : Family Browser (UCSC)SAMD9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD9
dbVarSAMD9
ClinVarSAMD9
1000_GenomesSAMD9 
Exome Variant ServerSAMD9
ExAC (Exome Aggregation Consortium)SAMD9 (select the gene name)
Genetic variants : HAPMAP54809
Genomic Variants (DGV)SAMD9 [DGVbeta]
DECIPHER (Syndromes)7:92728826-92747336  ENSG00000205413
CONAN: Copy Number AnalysisSAMD9 
Mutations
ICGC Data PortalSAMD9 
TCGA Data PortalSAMD9 
Broad Tumor PortalSAMD9
OASIS PortalSAMD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAMD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAMD9
DgiDB (Drug Gene Interaction Database)SAMD9
DoCM (Curated mutations)SAMD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAMD9 (select a term)
intoGenSAMD9
Cancer3DSAMD9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610455    610456   
Orphanet21245   
MedgenSAMD9
Genetic Testing Registry SAMD9
NextProtQ5K651 [Medical]
TSGene54809
GENETestsSAMD9
Huge Navigator SAMD9 [HugePedia]
snp3D : Map Gene to Disease54809
BioCentury BCIQSAMD9
ClinGenSAMD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54809
Chemical/Pharm GKB GenePA25948
Clinical trialSAMD9
Miscellaneous
canSAR (ICR)SAMD9 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD9
EVEXSAMD9
GoPubMedSAMD9
iHOPSAMD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:26:08 CET 2017

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