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SAMD9L (sterile alpha motif domain containing 9 like)

Identity

Alias_namesC7orf6
chromosome 7 open reading frame 6
sterile alpha motif domain containing 9-like
Alias_symbol (synonym)KIAA2005
FLJ39885
Other aliasDRIF2
UEF1
HGNC (Hugo) SAMD9L
LocusID (NCBI) 219285
Atlas_Id 55175
Location 7q21.2  [Link to chromosome band 7q21]
Location_base_pair Starts at 92759367 and ends at 92777701 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MTSS1L (16q22.1) / SAMD9L (7q21.2)SAMD9L (7q21.2) / ACVR2B (3p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAMD9L   1349
Cards
Entrez_Gene (NCBI)SAMD9L  219285  sterile alpha motif domain containing 9 like
AliasesC7orf6; DRIF2; UEF1
GeneCards (Weizmann)SAMD9L
Ensembl hg19 (Hinxton)ENSG00000177409 [Gene_View]  chr7:92759367-92777701 [Contig_View]  SAMD9L [Vega]
Ensembl hg38 (Hinxton)ENSG00000177409 [Gene_View]  chr7:92759367-92777701 [Contig_View]  SAMD9L [Vega]
ICGC DataPortalENSG00000177409
TCGA cBioPortalSAMD9L
AceView (NCBI)SAMD9L
Genatlas (Paris)SAMD9L
WikiGenes219285
SOURCE (Princeton)SAMD9L
Genetics Home Reference (NIH)SAMD9L
Genomic and cartography
GoldenPath hg19 (UCSC)SAMD9L  -     chr7:92759367-92777701 -  7q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SAMD9L  -     7q21.2   [Description]    (hg38-Dec_2013)
EnsemblSAMD9L - 7q21.2 [CytoView hg19]  SAMD9L - 7q21.2 [CytoView hg38]
Mapping of homologs : NCBISAMD9L [Mapview hg19]  SAMD9L [Mapview hg38]
OMIM611170   
Gene and transcription
Genbank (Entrez)AB095926 AF474973 AI139687 AK026672 AK097204
RefSeq transcript (Entrez)NM_001303496 NM_001303497 NM_001303498 NM_001303500 NM_152703
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)SAMD9L
Cluster EST : UnigeneHs.489118 [ NCBI ]
CGAP (NCI)Hs.489118
Alternative Splicing GalleryENSG00000177409
Gene ExpressionSAMD9L [ NCBI-GEO ]   SAMD9L [ EBI - ARRAY_EXPRESS ]   SAMD9L [ SEEK ]   SAMD9L [ MEM ]
Gene Expression Viewer (FireBrowse)SAMD9L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219285
GTEX Portal (Tissue expression)SAMD9L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVG5
Splice isoforms : SwissVarQ8IVG5
PhosPhoSitePlusQ8IVG5
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)SAM    SAM/pointed   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SAMD9L
DMDM Disease mutations219285
Blocks (Seattle)SAMD9L
SuperfamilyQ8IVG5
Human Protein AtlasENSG00000177409
Peptide AtlasQ8IVG5
HPRD10798
IPIIPI00719690   IPI00855755   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVG5
IntAct (EBI)Q8IVG5
FunCoupENSG00000177409
BioGRIDSAMD9L
STRING (EMBL)SAMD9L
ZODIACSAMD9L
Ontologies - Pathways
QuickGOQ8IVG5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSAMD9L
Atlas of Cancer Signalling NetworkSAMD9L
Wikipedia pathwaysSAMD9L
Orthology - Evolution
OrthoDB219285
GeneTree (enSembl)ENSG00000177409
Phylogenetic Trees/Animal Genes : TreeFamSAMD9L
HOVERGENQ8IVG5
HOGENOMQ8IVG5
Homologs : HomoloGeneSAMD9L
Homology/Alignments : Family Browser (UCSC)SAMD9L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMD9L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMD9L
dbVarSAMD9L
ClinVarSAMD9L
1000_GenomesSAMD9L 
Exome Variant ServerSAMD9L
ExAC (Exome Aggregation Consortium)SAMD9L (select the gene name)
Genetic variants : HAPMAP219285
Genomic Variants (DGV)SAMD9L [DGVbeta]
DECIPHER (Syndromes)7:92759367-92777701  ENSG00000177409
CONAN: Copy Number AnalysisSAMD9L 
Mutations
ICGC Data PortalSAMD9L 
TCGA Data PortalSAMD9L 
Broad Tumor PortalSAMD9L
OASIS PortalSAMD9L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMD9L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAMD9L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAMD9L
DgiDB (Drug Gene Interaction Database)SAMD9L
DoCM (Curated mutations)SAMD9L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAMD9L (select a term)
intoGenSAMD9L
Cancer3DSAMD9L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611170   
Orphanet2383   
MedgenSAMD9L
Genetic Testing Registry SAMD9L
NextProtQ8IVG5 [Medical]
TSGene219285
GENETestsSAMD9L
Huge Navigator SAMD9L [HugePedia]
snp3D : Map Gene to Disease219285
BioCentury BCIQSAMD9L
ClinGenSAMD9L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219285
Chemical/Pharm GKB GenePA25949
Clinical trialSAMD9L
Miscellaneous
canSAR (ICR)SAMD9L (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMD9L
EVEXSAMD9L
GoPubMedSAMD9L
iHOPSAMD9L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:26:09 CET 2017

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