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SAMM50 (SAMM50 sorting and assembly machinery component)

Identity

Alias (NCBI)CGI-51
OMP85
SAM50
TOB55
TRG-3
YNL026W
HGNC (Hugo) SAMM50
HGNC Alias symbCGI-51
TRG-3
YNL026W
OMP85
TOB55
SAM50
HGNC Previous namesorting and assembly machinery component 50 homolog (S. cerevisiae)
LocusID (NCBI) 25813
Atlas_Id 72972
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 43955442 and ends at 43996529 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DDX56 (7p13) / SAMM50 (22q13.31)HNRNPAB (5q35.3) / SAMM50 (22q13.31)PARVB (22q13.31) / SAMM50 (22q13.31)
SAMM50 (22q13.31) / UNC5B (10q22.1)PARVB SAMM50HNRNPAB SAMM50

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SAMM50   24276
Cards
Entrez_Gene (NCBI)SAMM50    SAMM50 sorting and assembly machinery component
AliasesCGI-51; OMP85; SAM50; TOB55; 
TRG-3; YNL026W
GeneCards (Weizmann)SAMM50
Ensembl hg19 (Hinxton)ENSG00000100347 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100347 [Gene_View]  ENSG00000100347 [Sequence]  chr22:43955442-43996529 [Contig_View]  SAMM50 [Vega]
ICGC DataPortalENSG00000100347
TCGA cBioPortalSAMM50
AceView (NCBI)SAMM50
Genatlas (Paris)SAMM50
SOURCE (Princeton)SAMM50
Genetics Home Reference (NIH)SAMM50
Genomic and cartography
GoldenPath hg38 (UCSC)SAMM50  -     chr22:43955442-43996529 +  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAMM50  -     22q13.31   [Description]    (hg19-Feb_2009)
GoldenPathSAMM50 - 22q13.31 [CytoView hg19]  SAMM50 - 22q13.31 [CytoView hg38]
ImmunoBaseENSG00000100347
Genome Data Viewer NCBISAMM50 [Mapview hg19]  
OMIM612058   
Gene and transcription
Genbank (Entrez)AF151809 AK001087 AK091282 AK093144 AK097015
RefSeq transcript (Entrez)NM_015380
Consensus coding sequences : CCDS (NCBI)SAMM50
Gene ExpressionSAMM50 [ NCBI-GEO ]   SAMM50 [ EBI - ARRAY_EXPRESS ]   SAMM50 [ SEEK ]   SAMM50 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMM50 [ Firebrowse - Broad ]
GenevisibleExpression of SAMM50 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25813
GTEX Portal (Tissue expression)SAMM50
Human Protein AtlasENSG00000100347-SAMM50 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y512   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y512  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y512
PhosPhoSitePlusQ9Y512
Domaine pattern : Prosite (Expaxy)POTRA (PS51779)   
Domains : Interpro (EBI)Bac_surfAg_D15    D15-like    POTRA   
Domain families : Pfam (Sanger)Omp85 (PF01103)   
Domain families : Pfam (NCBI)pfam01103   
Conserved Domain (NCBI)SAMM50
SuperfamilyQ9Y512
AlphaFold pdb e-kbQ9Y512   
Human Protein Atlas [tissue]ENSG00000100347-SAMM50 [tissue]
HPRD10826
Protein Interaction databases
DIP (DOE-UCLA)Q9Y512
IntAct (EBI)Q9Y512
BioGRIDSAMM50
STRING (EMBL)SAMM50
ZODIACSAMM50
Ontologies - Pathways
QuickGOQ9Y512
Ontology : AmiGOSAM complex  SAM complex  SAM complex  protein binding  mitochondrion  mitochondrion  mitochondrial outer membrane  inner mitochondrial membrane organization  integral component of membrane  integral component of membrane  mitochondrial respiratory chain complex assembly  mitochondrial respiratory chain complex assembly  cellular protein-containing complex assembly  cristae formation  protein insertion into mitochondrial outer membrane  protein insertion into mitochondrial outer membrane  extracellular exosome  MIB complex  
Ontology : EGO-EBISAM complex  SAM complex  SAM complex  protein binding  mitochondrion  mitochondrion  mitochondrial outer membrane  inner mitochondrial membrane organization  integral component of membrane  integral component of membrane  mitochondrial respiratory chain complex assembly  mitochondrial respiratory chain complex assembly  cellular protein-containing complex assembly  cristae formation  protein insertion into mitochondrial outer membrane  protein insertion into mitochondrial outer membrane  extracellular exosome  MIB complex  
NDEx NetworkSAMM50
Atlas of Cancer Signalling NetworkSAMM50
Wikipedia pathwaysSAMM50
Orthology - Evolution
OrthoDB25813
GeneTree (enSembl)ENSG00000100347
Phylogenetic Trees/Animal Genes : TreeFamSAMM50
Homologs : HomoloGeneSAMM50
Homology/Alignments : Family Browser (UCSC)SAMM50
Gene fusions - Rearrangements
Fusion : QuiverSAMM50
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAMM50 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAMM50
dbVarSAMM50
ClinVarSAMM50
MonarchSAMM50
1000_GenomesSAMM50 
Exome Variant ServerSAMM50
GNOMAD BrowserENSG00000100347
Varsome BrowserSAMM50
ACMGSAMM50 variants
VarityQ9Y512
Genomic Variants (DGV)SAMM50 [DGVbeta]
DECIPHERSAMM50 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAMM50 
Mutations
ICGC Data PortalSAMM50 
TCGA Data PortalSAMM50 
Broad Tumor PortalSAMM50
OASIS PortalSAMM50 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAMM50  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSAMM50
Mutations and Diseases : HGMDSAMM50
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSAMM50
DgiDB (Drug Gene Interaction Database)SAMM50
DoCM (Curated mutations)SAMM50
CIViC (Clinical Interpretations of Variants in Cancer)SAMM50
Cancer3DSAMM50
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612058   
Orphanet
DisGeNETSAMM50
MedgenSAMM50
Genetic Testing Registry SAMM50
NextProtQ9Y512 [Medical]
GENETestsSAMM50
Target ValidationSAMM50
Huge Navigator SAMM50 [HugePedia]
ClinGenSAMM50
Clinical trials, drugs, therapy
MyCancerGenomeSAMM50
Protein Interactions : CTDSAMM50
Pharm GKB GenePA142670954
PharosQ9Y512
Clinical trialSAMM50
Miscellaneous
canSAR (ICR)SAMM50
HarmonizomeSAMM50
DataMed IndexSAMM50
Probes
Litterature
PubMed76 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSAMM50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:19:45 CEST 2021

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