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SAMMSON (survival associated mitochondrial melanoma specific oncogenic non-coding RNA)

Identity

Alias_namesLINC01212
long intergenic non-protein coding RNA 1212
Other alias
HGNC (Hugo) SAMMSON
LocusID (NCBI) 101927152
Atlas_Id 55705
Location 3p13  [Link to chromosome band 3p13]
Location_base_pair Starts at 69999744 and ends at 70015300 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAMMSON   49644
Cards
Entrez_Gene (NCBI)SAMMSON  101927152  survival associated mitochondrial melanoma specific oncogenic non-coding RNA
AliasesLINC01212
GeneCards (Weizmann)SAMMSON
Ensembl hg19 (Hinxton)ENSG00000240405 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240405 [Gene_View]  chr3:69999744-70015300 [Contig_View]  SAMMSON [Vega]
ICGC DataPortalENSG00000240405
TCGA cBioPortalSAMMSON
AceView (NCBI)SAMMSON
Genatlas (Paris)SAMMSON
WikiGenes101927152
SOURCE (Princeton)SAMMSON
Genetics Home Reference (NIH)SAMMSON
Genomic and cartography
GoldenPath hg38 (UCSC)SAMMSON  -     chr3:69999744-70015300 +  3p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAMMSON  -     3p13   [Description]    (hg19-Feb_2009)
EnsemblSAMMSON - 3p13 [CytoView hg19]  SAMMSON - 3p13 [CytoView hg38]
Mapping of homologs : NCBISAMMSON [Mapview hg19]  SAMMSON [Mapview hg38]
OMIM616895   
Gene and transcription
Genbank (Entrez)BC015590
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAMMSON
Cluster EST : UnigeneHs.382046 [ NCBI ]
CGAP (NCI)Hs.382046
Alternative Splicing GalleryENSG00000240405
Gene ExpressionSAMMSON [ NCBI-GEO ]   SAMMSON [ EBI - ARRAY_EXPRESS ]   SAMMSON [ SEEK ]   SAMMSON [ MEM ]
Gene Expression Viewer (FireBrowse)SAMMSON [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927152
GTEX Portal (Tissue expression)SAMMSON
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SAMMSON
DMDM Disease mutations101927152
Blocks (Seattle)SAMMSON
Human Protein AtlasENSG00000240405
Protein Interaction databases
FunCoupENSG00000240405
BioGRIDSAMMSON
STRING (EMBL)SAMMSON
ZODIACSAMMSON
Ontologies - Pathways
Huge Navigator SAMMSON [HugePedia]
snp3D : Map Gene to Disease101927152
BioCentury BCIQSAMMSON
ClinGenSAMMSON
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927152
Clinical trialSAMMSON
Miscellaneous
canSAR (ICR)SAMMSON (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMMSON
EVEXSAMMSON
GoPubMedSAMMSON
iHOPSAMMSON
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:29:56 CEST 2017

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