Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SAMSN1-AS1 (SAMSN1 antisense RNA 1)

Identity

Alias_namesSAMSN1 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SAMSN1-AS1
LocusID (NCBI) 100874190
Atlas_Id 72973
Location 21q11.2  [Link to chromosome band 21q11]
Location_base_pair Starts at 14582202 and ends at 14598303 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SAMSN1-AS1   39599
Cards
Entrez_Gene (NCBI)SAMSN1-AS1  100874190  SAMSN1 antisense RNA 1
Aliases
GeneCards (Weizmann)SAMSN1-AS1
Ensembl hg19 (Hinxton)ENSG00000223662 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223662 [Gene_View]  ENSG00000223662 [Sequence]  chr21:14582202-14598303 [Contig_View]  SAMSN1-AS1 [Vega]
ICGC DataPortalENSG00000223662
TCGA cBioPortalSAMSN1-AS1
AceView (NCBI)SAMSN1-AS1
Genatlas (Paris)SAMSN1-AS1
WikiGenes100874190
SOURCE (Princeton)SAMSN1-AS1
Genetics Home Reference (NIH)SAMSN1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SAMSN1-AS1  -     chr21:14582202-14598303 +  21q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAMSN1-AS1  -     21q11.2   [Description]    (hg19-Feb_2009)
GoldenPathSAMSN1-AS1 - 21q11.2 [CytoView hg19]  SAMSN1-AS1 - 21q11.2 [CytoView hg38]
ImmunoBaseENSG00000223662
Mapping of homologs : NCBISAMSN1-AS1 [Mapview hg19]  SAMSN1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF184654
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAMSN1-AS1
Cluster EST : UnigeneHs.563053 [ NCBI ]
CGAP (NCI)Hs.563053
Alternative Splicing GalleryENSG00000223662
Gene ExpressionSAMSN1-AS1 [ NCBI-GEO ]   SAMSN1-AS1 [ EBI - ARRAY_EXPRESS ]   SAMSN1-AS1 [ SEEK ]   SAMSN1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SAMSN1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874190
GTEX Portal (Tissue expression)SAMSN1-AS1
Human Protein AtlasENSG00000223662-SAMSN1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SAMSN1-AS1
DMDM Disease mutations100874190
Blocks (Seattle)SAMSN1-AS1
Human Protein Atlas [tissue]ENSG00000223662-SAMSN1-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000223662
BioGRIDSAMSN1-AS1
STRING (EMBL)SAMSN1-AS1
ZODIACSAMSN1-AS1
Ontologies - Pathways
Huge Navigator SAMSN1-AS1 [HugePedia]
snp3D : Map Gene to Disease100874190
BioCentury BCIQSAMSN1-AS1
ClinGenSAMSN1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874190
Clinical trialSAMSN1-AS1
Miscellaneous
canSAR (ICR)SAMSN1-AS1 (select the gene name)
DataMed IndexSAMSN1-AS1
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAMSN1-AS1
EVEXSAMSN1-AS1
GoPubMedSAMSN1-AS1
iHOPSAMSN1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:04:28 CEST 2019
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