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SAMSN1 (SAM domain, SH3 domain and nuclear localization signals 1)

Identity

Other namesHACS1
NASH1
SASH2
SH3D6B
SLy2
HGNC (Hugo) SAMSN1
LocusID (NCBI) 64092
Location 21q11.2
Location_base_pair Starts at 15857549 and ends at 15955723 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SAMSN1   10528
Cards
Entrez_Gene (NCBI)SAMSN1  64092  SAM domain, SH3 domain and nuclear localization signals 1
GeneCards (Weizmann)SAMSN1
Ensembl (Hinxton)ENSG00000155307 [Gene_View]  chr21:15857549-15955723 [Contig_View]  SAMSN1 [Vega]
ICGC DataPortalENSG00000155307
cBioPortalSAMSN1
AceView (NCBI)SAMSN1
Genatlas (Paris)SAMSN1
WikiGenes64092
SOURCE (Princeton)NM_001256370 NM_001286523 NM_022136
Genomic and cartography
GoldenPath (UCSC)SAMSN1  -  21q11.2   chr21:15857549-15955723 -  21q11.2   [Description]    (hg19-Feb_2009)
EnsemblSAMSN1 - 21q11.2 [CytoView]
Mapping of homologs : NCBISAMSN1 [Mapview]
OMIM607978   
Gene and transcription
Genbank (Entrez)AA747998 AF218085 AF222927 AF519621 AI815031
RefSeq transcript (Entrez)NM_001256370 NM_001286523 NM_022136
RefSeq genomic (Entrez)AC_000153 NC_000021 NC_018932 NT_011512 NW_001838706 NW_004929426
Consensus coding sequences : CCDS (NCBI)SAMSN1
Cluster EST : UnigeneHs.719474 [ NCBI ]
CGAP (NCI)Hs.719474
Alternative Splicing : Fast-db (Paris)GSHG0019583
Alternative Splicing GalleryENSG00000155307
Gene ExpressionSAMSN1 [ NCBI-GEO ]     SAMSN1 [ SEEK ]   SAMSN1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSI8 (Uniprot)
NextProtQ9NSI8  [Medical]
With graphics : InterProQ9NSI8
Splice isoforms : SwissVarQ9NSI8 (Swissvar)
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)rSAM/SH3_domain-containing [organisation]   SAM [organisation]   SAM/pointed [organisation]   SAM_2 [organisation]   SH3_2 [organisation]   SH3_domain [organisation]  
Related proteins : CluSTrQ9NSI8
Domain families : Pfam (Sanger)SAM_2 (PF07647)    SH3_2 (PF07653)    SLY (PF12485)   
Domain families : Pfam (NCBI)pfam07647    pfam07653    pfam12485   
Domain families : Smart (EMBL)SAM (SM00454)  SH3 (SM00326)  
DMDM Disease mutations64092
Blocks (Seattle)Q9NSI8
PDB (SRS)2KEA   
PDB (PDBSum)2KEA   
PDB (IMB)2KEA   
PDB (RSDB)2KEA   
Human Protein AtlasENSG00000155307 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9NSI8
HPRD06413
IPIIPI00339277   IPI00168831   IPI00854619   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSI8
IntAct (EBI)Q9NSI8
FunCoupENSG00000155307
BioGRIDSAMSN1
InParanoidQ9NSI8
Interologous Interaction database Q9NSI8
IntegromeDBSAMSN1
STRING (EMBL)SAMSN1
Ontologies - Pathways
Ontology : AmiGOruffle  phosphotyrosine binding  negative regulation of adaptive immune response  nucleus  cytoplasm  poly(A) RNA binding  negative regulation of peptidyl-tyrosine phosphorylation  negative regulation of B cell activation  
Ontology : EGO-EBIruffle  phosphotyrosine binding  negative regulation of adaptive immune response  nucleus  cytoplasm  poly(A) RNA binding  negative regulation of peptidyl-tyrosine phosphorylation  negative regulation of B cell activation  
Protein Interaction DatabaseSAMSN1
Wikipedia pathwaysSAMSN1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SAMSN1
snp3D : Map Gene to Disease64092
SNP (GeneSNP Utah)SAMSN1
SNP : HGBaseSAMSN1
Genetic variants : HAPMAPSAMSN1
Exome VariantSAMSN1
1000_GenomesSAMSN1 
ICGC programENSG00000155307 
Somatic Mutations in Cancer : COSMICSAMSN1 
CONAN: Copy Number AnalysisSAMSN1 
Mutations and Diseases : HGMDSAMSN1
Mutations and Diseases : intOGenSAMSN1
Genomic VariantsSAMSN1  SAMSN1 [DGVbeta]
dbVarSAMSN1
ClinVarSAMSN1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM607978   
MedgenSAMSN1
GENETestsSAMSN1
Disease Genetic AssociationSAMSN1
Huge Navigator SAMSN1 [HugePedia]  SAMSN1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSAMSN1
Homology/Alignments : Family Browser (UCSC)SAMSN1
Phylogenetic Trees/Animal Genes : TreeFamSAMSN1
Chemical/Protein Interactions : CTD64092
Chemical/Pharm GKB GenePA34939
Clinical trialSAMSN1
Cancer Resource (Charite)ENSG00000155307
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
CoreMineSAMSN1
iHOPSAMSN1
OncoSearchSAMSN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 17:03:47 CEST 2014

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