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SAP25 (Sin3A associated protein 25)

Identity

Alias_namesSin3A-associated protein, 25kDa
Alias_symbol (synonym)FLJ00248
Other alias-
HGNC (Hugo) SAP25
LocusID (NCBI) 100316904
Atlas_Id 72975
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100572230 and ends at 100573820 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAP25   41908
Cards
Entrez_Gene (NCBI)SAP25  100316904  Sin3A associated protein 25
Aliases
GeneCards (Weizmann)SAP25
Ensembl hg19 (Hinxton)ENSG00000205307 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205307 [Gene_View]  chr7:100572230-100573820 [Contig_View]  SAP25 [Vega]
ICGC DataPortalENSG00000205307
TCGA cBioPortalSAP25
AceView (NCBI)SAP25
Genatlas (Paris)SAP25
WikiGenes100316904
SOURCE (Princeton)SAP25
Genetics Home Reference (NIH)SAP25
Genomic and cartography
GoldenPath hg38 (UCSC)SAP25  -     chr7:100572230-100573820 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAP25  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblSAP25 - 7q22.1 [CytoView hg19]  SAP25 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBISAP25 [Mapview hg19]  SAP25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI554115 BQ635892 BX117305 CR976678
RefSeq transcript (Entrez)NM_001168682 NM_001348670 NM_001348671 NM_001348677 NM_001348680
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAP25
Cluster EST : UnigeneHs.633863 [ NCBI ]
CGAP (NCI)Hs.633863
Alternative Splicing GalleryENSG00000205307
Gene ExpressionSAP25 [ NCBI-GEO ]   SAP25 [ EBI - ARRAY_EXPRESS ]   SAP25 [ SEEK ]   SAP25 [ MEM ]
Gene Expression Viewer (FireBrowse)SAP25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100316904
GTEX Portal (Tissue expression)SAP25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TEE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEE9
Splice isoforms : SwissVarQ8TEE9
PhosPhoSitePlusQ8TEE9
Domains : Interpro (EBI)SAP25   
Domain families : Pfam (Sanger)SAP25 (PF15476)   
Domain families : Pfam (NCBI)pfam15476   
Conserved Domain (NCBI)SAP25
DMDM Disease mutations100316904
Blocks (Seattle)SAP25
SuperfamilyQ8TEE9
Human Protein AtlasENSG00000205307
Peptide AtlasQ8TEE9
IPIIPI00291704   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEE9
IntAct (EBI)Q8TEE9
FunCoupENSG00000205307
BioGRIDSAP25
STRING (EMBL)SAP25
ZODIACSAP25
Ontologies - Pathways
QuickGOQ8TEE9
Ontology : AmiGOnucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkSAP25
Atlas of Cancer Signalling NetworkSAP25
Wikipedia pathwaysSAP25
Orthology - Evolution
OrthoDB100316904
GeneTree (enSembl)ENSG00000205307
Phylogenetic Trees/Animal Genes : TreeFamSAP25
HOVERGENQ8TEE9
HOGENOMQ8TEE9
Homologs : HomoloGeneSAP25
Homology/Alignments : Family Browser (UCSC)SAP25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAP25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAP25
dbVarSAP25
ClinVarSAP25
1000_GenomesSAP25 
Exome Variant ServerSAP25
ExAC (Exome Aggregation Consortium)SAP25 (select the gene name)
Genetic variants : HAPMAP100316904
Genomic Variants (DGV)SAP25 [DGVbeta]
DECIPHERSAP25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAP25 
Mutations
ICGC Data PortalSAP25 
TCGA Data PortalSAP25 
Broad Tumor PortalSAP25
OASIS PortalSAP25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAP25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAP25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAP25
DgiDB (Drug Gene Interaction Database)SAP25
DoCM (Curated mutations)SAP25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAP25 (select a term)
intoGenSAP25
Cancer3DSAP25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSAP25
Genetic Testing Registry SAP25
NextProtQ8TEE9 [Medical]
TSGene100316904
GENETestsSAP25
Target ValidationSAP25
Huge Navigator SAP25 [HugePedia]
snp3D : Map Gene to Disease100316904
BioCentury BCIQSAP25
ClinGenSAP25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100316904
Chemical/Pharm GKB GenePA166049074
Clinical trialSAP25
Miscellaneous
canSAR (ICR)SAP25 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAP25
EVEXSAP25
GoPubMedSAP25
iHOPSAP25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:50 CEST 2017

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