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SAP30 (Sin3A associated protein 30)

Identity

Alias_namessin3A-associated protein
Other alias-
HGNC (Hugo) SAP30
LocusID (NCBI) 8819
Atlas_Id 42202
Location 4q34.1  [Link to chromosome band 4q34]
Location_base_pair Starts at 173370942 and ends at 173377532 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GALNT7 (4q34.1) / SAP30 (4q34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAP30   10532
Cards
Entrez_Gene (NCBI)SAP30  8819  Sin3A associated protein 30
Aliases
GeneCards (Weizmann)SAP30
Ensembl hg19 (Hinxton)ENSG00000164105 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164105 [Gene_View]  chr4:173370942-173377532 [Contig_View]  SAP30 [Vega]
ICGC DataPortalENSG00000164105
TCGA cBioPortalSAP30
AceView (NCBI)SAP30
Genatlas (Paris)SAP30
WikiGenes8819
SOURCE (Princeton)SAP30
Genetics Home Reference (NIH)SAP30
Genomic and cartography
GoldenPath hg38 (UCSC)SAP30  -     chr4:173370942-173377532 +  4q34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAP30  -     4q34.1   [Description]    (hg19-Feb_2009)
EnsemblSAP30 - 4q34.1 [CytoView hg19]  SAP30 - 4q34.1 [CytoView hg38]
Mapping of homologs : NCBISAP30 [Mapview hg19]  SAP30 [Mapview hg38]
OMIM603378   
Gene and transcription
Genbank (Entrez)AF055993 AW236579 BC016757 DQ892828
RefSeq transcript (Entrez)NM_003864
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAP30
Cluster EST : UnigeneHs.591715 [ NCBI ]
CGAP (NCI)Hs.591715
Alternative Splicing GalleryENSG00000164105
Gene ExpressionSAP30 [ NCBI-GEO ]   SAP30 [ EBI - ARRAY_EXPRESS ]   SAP30 [ SEEK ]   SAP30 [ MEM ]
Gene Expression Viewer (FireBrowse)SAP30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8819
GTEX Portal (Tissue expression)SAP30
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75446   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75446  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75446
Splice isoforms : SwissVarO75446
PhosPhoSitePlusO75446
Domains : Interpro (EBI)His_deAcase_SAP30/SAP30L    SAP30_Sin3-bd    SAP30_zn-finger   
Domain families : Pfam (Sanger)SAP30_Sin3_bdg (PF13867)    zf-SAP30 (PF13866)   
Domain families : Pfam (NCBI)pfam13867    pfam13866   
Conserved Domain (NCBI)SAP30
DMDM Disease mutations8819
Blocks (Seattle)SAP30
PDB (SRS)2KDP   
PDB (PDBSum)2KDP   
PDB (IMB)2KDP   
PDB (RSDB)2KDP   
Structural Biology KnowledgeBase2KDP   
SCOP (Structural Classification of Proteins)2KDP   
CATH (Classification of proteins structures)2KDP   
SuperfamilyO75446
Human Protein AtlasENSG00000164105
Peptide AtlasO75446
HPRD04540
IPIIPI00022019   
Protein Interaction databases
DIP (DOE-UCLA)O75446
IntAct (EBI)O75446
FunCoupENSG00000164105
BioGRIDSAP30
STRING (EMBL)SAP30
ZODIACSAP30
Ontologies - Pathways
QuickGOO75446
Ontology : AmiGOhistone deacetylase complex  negative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription corepressor activity  histone deacetylase activity  histone deacetylase activity  protein binding  nucleoplasm  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  histone deacetylation  skeletal muscle cell differentiation  metal ion binding  
Ontology : EGO-EBIhistone deacetylase complex  negative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription corepressor activity  histone deacetylase activity  histone deacetylase activity  protein binding  nucleoplasm  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  histone deacetylation  skeletal muscle cell differentiation  metal ion binding  
NDEx NetworkSAP30
Atlas of Cancer Signalling NetworkSAP30
Wikipedia pathwaysSAP30
Orthology - Evolution
OrthoDB8819
GeneTree (enSembl)ENSG00000164105
Phylogenetic Trees/Animal Genes : TreeFamSAP30
HOVERGENO75446
HOGENOMO75446
Homologs : HomoloGeneSAP30
Homology/Alignments : Family Browser (UCSC)SAP30
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAP30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAP30
dbVarSAP30
ClinVarSAP30
1000_GenomesSAP30 
Exome Variant ServerSAP30
ExAC (Exome Aggregation Consortium)SAP30 (select the gene name)
Genetic variants : HAPMAP8819
Genomic Variants (DGV)SAP30 [DGVbeta]
DECIPHERSAP30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAP30 
Mutations
ICGC Data PortalSAP30 
TCGA Data PortalSAP30 
Broad Tumor PortalSAP30
OASIS PortalSAP30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAP30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAP30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAP30
DgiDB (Drug Gene Interaction Database)SAP30
DoCM (Curated mutations)SAP30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAP30 (select a term)
intoGenSAP30
Cancer3DSAP30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603378   
Orphanet
MedgenSAP30
Genetic Testing Registry SAP30
NextProtO75446 [Medical]
TSGene8819
GENETestsSAP30
Target ValidationSAP30
Huge Navigator SAP30 [HugePedia]
snp3D : Map Gene to Disease8819
BioCentury BCIQSAP30
ClinGenSAP30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8819
Chemical/Pharm GKB GenePA34941
Clinical trialSAP30
Miscellaneous
canSAR (ICR)SAP30 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAP30
EVEXSAP30
GoPubMedSAP30
iHOPSAP30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:06:34 CEST 2017

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