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SAP30BP (SAP30 binding protein)

Identity

Alias (NCBI)HCNGP
HTRG
HTRP
HGNC (Hugo) SAP30BP
HGNC Alias symbHCNGP
HTRG
HTRP
LocusID (NCBI) 29115
Atlas_Id 72976
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75667338 and ends at 75708059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BEAN1 (16q21) / SAP30BP (17q25.1)IPO11 (5q12.1) / SAP30BP (17q25.1)ITGB4 (17q25.1) / SAP30BP (17q25.1)
RNF220 (1p34.1) / SAP30BP (17q25.1)SAP30BP (17q25.1) / BEAN1 (16q21)SAP30BP (17q25.1) / ICT1 (17q25.1)
SAP30BP (17q25.1) / SAP30BP (17q25.1)SAP30BP (17q25.1) / TM7SF3 (12p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SAP30BP   30785
Cards
Entrez_Gene (NCBI)SAP30BP    SAP30 binding protein
AliasesHCNGP; HTRG; HTRP
GeneCards (Weizmann)SAP30BP
Ensembl hg19 (Hinxton)ENSG00000161526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161526 [Gene_View]  ENSG00000161526 [Sequence]  chr17:75667338-75708059 [Contig_View]  SAP30BP [Vega]
ICGC DataPortalENSG00000161526
TCGA cBioPortalSAP30BP
AceView (NCBI)SAP30BP
Genatlas (Paris)SAP30BP
SOURCE (Princeton)SAP30BP
Genetics Home Reference (NIH)SAP30BP
Genomic and cartography
GoldenPath hg38 (UCSC)SAP30BP  -     chr17:75667338-75708059 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAP30BP  -     17q25.1   [Description]    (hg19-Feb_2009)
GoldenPathSAP30BP - 17q25.1 [CytoView hg19]  SAP30BP - 17q25.1 [CytoView hg38]
ImmunoBaseENSG00000161526
Genome Data Viewer NCBISAP30BP [Mapview hg19]  
OMIM610218   
Gene and transcription
Genbank (Entrez)AF087869 AF119664 AF450482 AK002202 AK023157
RefSeq transcript (Entrez)NM_001301839 NM_001301855 NM_013260
Consensus coding sequences : CCDS (NCBI)SAP30BP
Gene ExpressionSAP30BP [ NCBI-GEO ]   SAP30BP [ EBI - ARRAY_EXPRESS ]   SAP30BP [ SEEK ]   SAP30BP [ MEM ]
Gene Expression Viewer (FireBrowse)SAP30BP [ Firebrowse - Broad ]
GenevisibleExpression of SAP30BP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29115
GTEX Portal (Tissue expression)SAP30BP
Human Protein AtlasENSG00000161526-SAP30BP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHR5
PhosPhoSitePlusQ9UHR5
Domains : Interpro (EBI)SAP30BP   
Domain families : Pfam (Sanger)HCNGP (PF07818)   
Domain families : Pfam (NCBI)pfam07818   
Conserved Domain (NCBI)SAP30BP
SuperfamilyQ9UHR5
AlphaFold pdb e-kbQ9UHR5   
Human Protein Atlas [tissue]ENSG00000161526-SAP30BP [tissue]
HPRD17094
Protein Interaction databases
DIP (DOE-UCLA)Q9UHR5
IntAct (EBI)Q9UHR5
BioGRIDSAP30BP
STRING (EMBL)SAP30BP
ZODIACSAP30BP
Ontologies - Pathways
QuickGOQ9UHR5
Ontology : AmiGOprotein binding  nucleus  nucleus  nucleoplasm  regulation of transcription, DNA-templated  apoptotic process  response to virus  positive regulation of histone deacetylation  intermediate filament cytoskeleton  modulation by host of symbiont transcription  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  nucleoplasm  regulation of transcription, DNA-templated  apoptotic process  response to virus  positive regulation of histone deacetylation  intermediate filament cytoskeleton  modulation by host of symbiont transcription  
NDEx NetworkSAP30BP
Atlas of Cancer Signalling NetworkSAP30BP
Wikipedia pathwaysSAP30BP
Orthology - Evolution
OrthoDB29115
GeneTree (enSembl)ENSG00000161526
Phylogenetic Trees/Animal Genes : TreeFamSAP30BP
Homologs : HomoloGeneSAP30BP
Homology/Alignments : Family Browser (UCSC)SAP30BP
Gene fusions - Rearrangements
Fusion : QuiverSAP30BP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAP30BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAP30BP
dbVarSAP30BP
ClinVarSAP30BP
MonarchSAP30BP
1000_GenomesSAP30BP 
Exome Variant ServerSAP30BP
GNOMAD BrowserENSG00000161526
Varsome BrowserSAP30BP
ACMGSAP30BP variants
VarityQ9UHR5
Genomic Variants (DGV)SAP30BP [DGVbeta]
DECIPHERSAP30BP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAP30BP 
Mutations
ICGC Data PortalSAP30BP 
TCGA Data PortalSAP30BP 
Broad Tumor PortalSAP30BP
OASIS PortalSAP30BP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAP30BP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSAP30BP
Mutations and Diseases : HGMDSAP30BP
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSAP30BP
DgiDB (Drug Gene Interaction Database)SAP30BP
DoCM (Curated mutations)SAP30BP
CIViC (Clinical Interpretations of Variants in Cancer)SAP30BP
Cancer3DSAP30BP
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610218   
Orphanet
DisGeNETSAP30BP
MedgenSAP30BP
Genetic Testing Registry SAP30BP
NextProtQ9UHR5 [Medical]
GENETestsSAP30BP
Target ValidationSAP30BP
Huge Navigator SAP30BP [HugePedia]
ClinGenSAP30BP
Clinical trials, drugs, therapy
MyCancerGenomeSAP30BP
Protein Interactions : CTDSAP30BP
Pharm GKB GenePA142670955
PharosQ9UHR5
Clinical trialSAP30BP
Miscellaneous
canSAR (ICR)SAP30BP
HarmonizomeSAP30BP
DataMed IndexSAP30BP
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSAP30BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:19:46 CEST 2021

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