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SAP30BP (SAP30 binding protein)

Identity

Alias_symbol (synonym)HCNGP
HTRG
HTRP
Other alias
HGNC (Hugo) SAP30BP
LocusID (NCBI) 29115
Atlas_Id 72976
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75667116 and ends at 75708062 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BEAN1 (16q21) / SAP30BP (17q25.1)IPO11 (5q12.1) / SAP30BP (17q25.1)ITGB4 (17q25.1) / SAP30BP (17q25.1)
RNF220 (1p34.1) / SAP30BP (17q25.1)SAP30BP (17q25.1) / BEAN1 (16q21)SAP30BP (17q25.1) / ICT1 (17q25.1)
SAP30BP (17q25.1) / SAP30BP (17q25.1)SAP30BP (17q25.1) / TM7SF3 (12p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAP30BP   30785
Cards
Entrez_Gene (NCBI)SAP30BP  29115  SAP30 binding protein
AliasesHCNGP; HTRG; HTRP
GeneCards (Weizmann)SAP30BP
Ensembl hg19 (Hinxton)ENSG00000161526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161526 [Gene_View]  chr17:75667116-75708062 [Contig_View]  SAP30BP [Vega]
ICGC DataPortalENSG00000161526
TCGA cBioPortalSAP30BP
AceView (NCBI)SAP30BP
Genatlas (Paris)SAP30BP
WikiGenes29115
SOURCE (Princeton)SAP30BP
Genetics Home Reference (NIH)SAP30BP
Genomic and cartography
GoldenPath hg38 (UCSC)SAP30BP  -     chr17:75667116-75708062 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAP30BP  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblSAP30BP - 17q25.1 [CytoView hg19]  SAP30BP - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBISAP30BP [Mapview hg19]  SAP30BP [Mapview hg38]
OMIM610218   
Gene and transcription
Genbank (Entrez)AF087869 AF119664 AF450482 AK002202 AK023157
RefSeq transcript (Entrez)NM_001301839 NM_001301855 NM_013260
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAP30BP
Cluster EST : UnigeneHs.655088 [ NCBI ]
CGAP (NCI)Hs.655088
Alternative Splicing GalleryENSG00000161526
Gene ExpressionSAP30BP [ NCBI-GEO ]   SAP30BP [ EBI - ARRAY_EXPRESS ]   SAP30BP [ SEEK ]   SAP30BP [ MEM ]
Gene Expression Viewer (FireBrowse)SAP30BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29115
GTEX Portal (Tissue expression)SAP30BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHR5
Splice isoforms : SwissVarQ9UHR5
PhosPhoSitePlusQ9UHR5
Domains : Interpro (EBI)SAP30BP   
Domain families : Pfam (Sanger)HCNGP (PF07818)   
Domain families : Pfam (NCBI)pfam07818   
Conserved Domain (NCBI)SAP30BP
DMDM Disease mutations29115
Blocks (Seattle)SAP30BP
SuperfamilyQ9UHR5
Human Protein AtlasENSG00000161526
Peptide AtlasQ9UHR5
HPRD17094
IPIIPI00549296   IPI00333699   IPI00794827   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHR5
IntAct (EBI)Q9UHR5
FunCoupENSG00000161526
BioGRIDSAP30BP
STRING (EMBL)SAP30BP
ZODIACSAP30BP
Ontologies - Pathways
QuickGOQ9UHR5
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  apoptotic process  positive regulation of cell death  intermediate filament cytoskeleton  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  apoptotic process  positive regulation of cell death  intermediate filament cytoskeleton  
NDEx NetworkSAP30BP
Atlas of Cancer Signalling NetworkSAP30BP
Wikipedia pathwaysSAP30BP
Orthology - Evolution
OrthoDB29115
GeneTree (enSembl)ENSG00000161526
Phylogenetic Trees/Animal Genes : TreeFamSAP30BP
HOVERGENQ9UHR5
HOGENOMQ9UHR5
Homologs : HomoloGeneSAP30BP
Homology/Alignments : Family Browser (UCSC)SAP30BP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAP30BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAP30BP
dbVarSAP30BP
ClinVarSAP30BP
1000_GenomesSAP30BP 
Exome Variant ServerSAP30BP
ExAC (Exome Aggregation Consortium)SAP30BP (select the gene name)
Genetic variants : HAPMAP29115
Genomic Variants (DGV)SAP30BP [DGVbeta]
DECIPHERSAP30BP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAP30BP 
Mutations
ICGC Data PortalSAP30BP 
TCGA Data PortalSAP30BP 
Broad Tumor PortalSAP30BP
OASIS PortalSAP30BP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAP30BP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAP30BP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAP30BP
DgiDB (Drug Gene Interaction Database)SAP30BP
DoCM (Curated mutations)SAP30BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAP30BP (select a term)
intoGenSAP30BP
Cancer3DSAP30BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610218   
Orphanet
MedgenSAP30BP
Genetic Testing Registry SAP30BP
NextProtQ9UHR5 [Medical]
TSGene29115
GENETestsSAP30BP
Target ValidationSAP30BP
Huge Navigator SAP30BP [HugePedia]
snp3D : Map Gene to Disease29115
BioCentury BCIQSAP30BP
ClinGenSAP30BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29115
Chemical/Pharm GKB GenePA142670955
Clinical trialSAP30BP
Miscellaneous
canSAR (ICR)SAP30BP (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAP30BP
EVEXSAP30BP
GoPubMedSAP30BP
iHOPSAP30BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:10 CEST 2017

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