Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SAP30L (SAP30-like)

Identity

Alias_symbol (synonym)FLJ11526
NS4ATP2
Other alias
HGNC (Hugo) SAP30L
LocusID (NCBI) 79685
Atlas_Id 45638
Location 5q33.2  [Link to chromosome band 5q33]
Location_base_pair Starts at 153825517 and ends at 153840613 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF720 (16p11.2) / SAP30L (5q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAP30L   25663
Cards
Entrez_Gene (NCBI)SAP30L  79685  SAP30-like
AliasesNS4ATP2
GeneCards (Weizmann)SAP30L
Ensembl hg19 (Hinxton)ENSG00000164576 [Gene_View]  chr5:153825517-153840613 [Contig_View]  SAP30L [Vega]
Ensembl hg38 (Hinxton)ENSG00000164576 [Gene_View]  chr5:153825517-153840613 [Contig_View]  SAP30L [Vega]
ICGC DataPortalENSG00000164576
TCGA cBioPortalSAP30L
AceView (NCBI)SAP30L
Genatlas (Paris)SAP30L
WikiGenes79685
SOURCE (Princeton)SAP30L
Genetics Home Reference (NIH)SAP30L
Genomic and cartography
GoldenPath hg19 (UCSC)SAP30L  -     chr5:153825517-153840613 +  5q33.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SAP30L  -     5q33.2   [Description]    (hg38-Dec_2013)
EnsemblSAP30L - 5q33.2 [CytoView hg19]  SAP30L - 5q33.2 [CytoView hg38]
Mapping of homologs : NCBISAP30L [Mapview hg19]  SAP30L [Mapview hg38]
OMIM610398   
Gene and transcription
Genbank (Entrez)AF085957 AF157115 AF157116 AI144341 AI199517
RefSeq transcript (Entrez)NM_001131062 NM_001131063 NM_024632
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)SAP30L
Cluster EST : UnigeneHs.592566 [ NCBI ]
CGAP (NCI)Hs.592566
Alternative Splicing GalleryENSG00000164576
Gene ExpressionSAP30L [ NCBI-GEO ]   SAP30L [ EBI - ARRAY_EXPRESS ]   SAP30L [ SEEK ]   SAP30L [ MEM ]
Gene Expression Viewer (FireBrowse)SAP30L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79685
GTEX Portal (Tissue expression)SAP30L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAJ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAJ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAJ7
Splice isoforms : SwissVarQ9HAJ7
PhosPhoSitePlusQ9HAJ7
Domains : Interpro (EBI)His_deAcase_SAP30/SAP30L    SAP30_Sin3-bd    SAP30_zn-finger   
Domain families : Pfam (Sanger)SAP30_Sin3_bdg (PF13867)    zf-SAP30 (PF13866)   
Domain families : Pfam (NCBI)pfam13867    pfam13866   
Conserved Domain (NCBI)SAP30L
DMDM Disease mutations79685
Blocks (Seattle)SAP30L
PDB (SRS)2N1U   
PDB (PDBSum)2N1U   
PDB (IMB)2N1U   
PDB (RSDB)2N1U   
Structural Biology KnowledgeBase2N1U   
SCOP (Structural Classification of Proteins)2N1U   
CATH (Classification of proteins structures)2N1U   
SuperfamilyQ9HAJ7
Human Protein AtlasENSG00000164576
Peptide AtlasQ9HAJ7
HPRD08563
IPIIPI00002831   IPI00909187   IPI00909679   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAJ7
IntAct (EBI)Q9HAJ7
FunCoupENSG00000164576
BioGRIDSAP30L
STRING (EMBL)SAP30L
ZODIACSAP30L
Ontologies - Pathways
QuickGOQ9HAJ7
Ontology : AmiGODNA binding  histone deacetylase activity  protein binding  nucleus  nucleoplasm  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  histone deacetylation  metal ion binding  
Ontology : EGO-EBIDNA binding  histone deacetylase activity  protein binding  nucleus  nucleoplasm  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  histone deacetylation  metal ion binding  
NDEx NetworkSAP30L
Atlas of Cancer Signalling NetworkSAP30L
Wikipedia pathwaysSAP30L
Orthology - Evolution
OrthoDB79685
GeneTree (enSembl)ENSG00000164576
Phylogenetic Trees/Animal Genes : TreeFamSAP30L
HOVERGENQ9HAJ7
HOGENOMQ9HAJ7
Homologs : HomoloGeneSAP30L
Homology/Alignments : Family Browser (UCSC)SAP30L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAP30L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAP30L
dbVarSAP30L
ClinVarSAP30L
1000_GenomesSAP30L 
Exome Variant ServerSAP30L
ExAC (Exome Aggregation Consortium)SAP30L (select the gene name)
Genetic variants : HAPMAP79685
Genomic Variants (DGV)SAP30L [DGVbeta]
DECIPHER (Syndromes)5:153825517-153840613  ENSG00000164576
CONAN: Copy Number AnalysisSAP30L 
Mutations
ICGC Data PortalSAP30L 
TCGA Data PortalSAP30L 
Broad Tumor PortalSAP30L
OASIS PortalSAP30L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAP30L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAP30L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAP30L
DgiDB (Drug Gene Interaction Database)SAP30L
DoCM (Curated mutations)SAP30L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAP30L (select a term)
intoGenSAP30L
Cancer3DSAP30L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610398   
Orphanet
MedgenSAP30L
Genetic Testing Registry SAP30L
NextProtQ9HAJ7 [Medical]
TSGene79685
GENETestsSAP30L
Huge Navigator SAP30L [HugePedia]
snp3D : Map Gene to Disease79685
BioCentury BCIQSAP30L
ClinGenSAP30L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79685
Chemical/Pharm GKB GenePA144596386
Clinical trialSAP30L
Miscellaneous
canSAR (ICR)SAP30L (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAP30L
EVEXSAP30L
GoPubMedSAP30L
iHOPSAP30L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:26:10 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.