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SAPCD1-AS1 (SAPCD1 antisense RNA 1)

Identity

Alias_namesC6orf26-AS1
C6orf26 antisense RNA 1 (non-protein coding)
SAPCD1 antisense RNA 1 (non-protein coding)
Other alias
HGNC (Hugo) SAPCD1-AS1
LocusID (NCBI) 104413891
Atlas_Id 76652
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31764136 and ends at 31765588 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAPCD1-AS1   39824
Cards
Entrez_Gene (NCBI)SAPCD1-AS1  104413891  SAPCD1 antisense RNA 1
AliasesC6orf26-AS1
GeneCards (Weizmann)SAPCD1-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:31764136-31765588 [Contig_View]  SAPCD1-AS1 [Vega]
TCGA cBioPortalSAPCD1-AS1
AceView (NCBI)SAPCD1-AS1
Genatlas (Paris)SAPCD1-AS1
WikiGenes104413891
SOURCE (Princeton)SAPCD1-AS1
Genetics Home Reference (NIH)SAPCD1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SAPCD1-AS1  -     chr6:31764136-31765588 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAPCD1-AS1  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblSAPCD1-AS1 - 6p21.33 [CytoView hg19]  SAPCD1-AS1 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBISAPCD1-AS1 [Mapview hg19]  SAPCD1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM509003 BU680278
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167247 NT_167249
Consensus coding sequences : CCDS (NCBI)SAPCD1-AS1
Cluster EST : UnigeneHs.737080 [ NCBI ]
CGAP (NCI)Hs.737080
Gene ExpressionSAPCD1-AS1 [ NCBI-GEO ]   SAPCD1-AS1 [ EBI - ARRAY_EXPRESS ]   SAPCD1-AS1 [ SEEK ]   SAPCD1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SAPCD1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104413891
GTEX Portal (Tissue expression)SAPCD1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SAPCD1-AS1
DMDM Disease mutations104413891
Blocks (Seattle)SAPCD1-AS1
Protein Interaction databases
BioGRIDSAPCD1-AS1
STRING (EMBL)SAPCD1-AS1
ZODIACSAPCD1-AS1
Ontologies - Pathways
Huge Navigator SAPCD1-AS1 [HugePedia]
snp3D : Map Gene to Disease104413891
BioCentury BCIQSAPCD1-AS1
ClinGenSAPCD1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104413891
Clinical trialSAPCD1-AS1
Miscellaneous
canSAR (ICR)SAPCD1-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAPCD1-AS1
EVEXSAPCD1-AS1
GoPubMedSAPCD1-AS1
iHOPSAPCD1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:28:04 CEST 2018

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